# Tools for Sanger Sequencing Data in R

## Documentation for package ‘sangerseqR’ version 1.12.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

sangerseqR-package | Tools for Sanger Sequencing Data in R
abif | ABIF Class Objects
abif-class | ABIF Class Objects
chromatogram | Generate Chromatogram
chromatogram-method | Generate Chromatogram
makeBaseCalls | Make Basecalls
makeBaseCalls-method | Make Basecalls
peakAmpMatrix | Sangerseq Accessor Functions
peakAmpMatrix-method | Sangerseq Accessor Functions
peakAmpMatrix<- | Sangerseq Accessor Functions
peakAmpMatrix<--method | Sangerseq Accessor Functions
peakPosMatrix | Sangerseq Accessor Functions
peakPosMatrix-method | Sangerseq Accessor Functions
peakPosMatrix<- | Sangerseq Accessor Functions
peakPosMatrix<--method | Sangerseq Accessor Functions
PolyPeakParser | Run Poly Peak Parser
primarySeq | Sangerseq Accessor Functions
primarySeq-method | Sangerseq Accessor Functions
primarySeq<- | Sangerseq Accessor Functions
primarySeq<--method | Sangerseq Accessor Functions
primarySeqID | Sangerseq Accessor Functions
primarySeqID-method | Sangerseq Accessor Functions
primarySeqID<- | Sangerseq Accessor Functions
primarySeqID<--method | Sangerseq Accessor Functions
read.abif | Read ABIF Files
read.scf | Read Scf Files
readsangerseq | Read Scf or ABIF Files
sangerseq | Sangerseq Class Objects
sangerseq-class | Sangerseq Class Objects
sangerseq-method | Sangerseq Class Objects
sangerseqR | Tools for Sanger Sequencing Data in R
scf | Scf Class Objects
scf-class | Scf Class Objects
secondarySeq | Sangerseq Accessor Functions
secondarySeq-method | Sangerseq Accessor Functions
secondarySeq<- | Sangerseq Accessor Functions
secondarySeq<--method | Sangerseq Accessor Functions
secondarySeqID | Sangerseq Accessor Functions
secondarySeqID-method | Sangerseq Accessor Functions
secondarySeqID<- | Sangerseq Accessor Functions
secondarySeqID<--method | Sangerseq Accessor Functions
setAllelePhase | Set Reference and Alternate Alleles
setAllelePhase-method | Set Reference and Alternate Alleles
traceMatrix | Sangerseq Accessor Functions
traceMatrix-method | Sangerseq Accessor Functions
traceMatrix<- | Sangerseq Accessor Functions
traceMatrix<--method | Sangerseq Accessor Functions