Package: paxtoolsr
Type: Package
Title: PaxtoolsR: Access Pathways from Multiple Databases through
        BioPAX and Pathway Commons
Version: 1.10.0
Date: 2017-04-09
Author: Augustin Luna
Maintainer: Augustin Luna <lunaa@cbio.mskcc.org>
Imports: httr, igraph, plyr, rjson, R.utils, data.table, jsonlite
Depends: R (>= 3.2), rJava (>= 0.9-8), XML
Suggests: testthat, knitr, BiocStyle, rmarkdown, RColorBrewer, biomaRt,
        estrogen, affy, hgu95av2, hgu95av2cdf, limma, foreach, doSNOW,
        parallel, org.Hs.eg.db
SystemRequirements: Java (>= 1.6)
License: LGPL-3
Description: The package provides a set of R functions for interacting with
    BioPAX OWL files using Paxtools and the querying Pathway Commons (PC) molecular
    interaction database that are hosted by the Computational Biology Center at
    Memorial Sloan-Kettering Cancer Center (MSKCC). Pathway Commons databases
    include: BIND, BioGRID, CORUM, CTD, DIP, DrugBank, HPRD, HumanCyc, IntAct, KEGG,
    MirTarBase, Panther, PhosphoSitePlus, Reactome, RECON, TRANSFAC.
VignetteBuilder: knitr
LazyData: true
biocViews: GeneSetEnrichment, GraphAndNetwork, Pathways, Software,
        SystemsBiology, NetworkEnrichment, Network, Reactome, KEGG
URL: https://github.com/BioPAX/paxtoolsr
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2017-04-25 00:49:51 UTC; biocbuild
Built: R 3.4.0; ; 2017-04-25 06:07:54 UTC; windows
