# A k-tables approach to integrate multiple Omics-Data

## Documentation for package ‘kimod’ version 1.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

B C D E G I L N P Q R S T W

## -- B --

Biplot | Plot a 'Biplot' of a SelectVar class object
Biplot-method | Plot a 'Biplot' of a SelectVar class object
BootPlot | Plot a 'BootPlot' of a Bootstrap object
BootPlot-method | Plot a 'BootPlot' of a Bootstrap object
Bootstrap | Funtion 'Bootstrap' of a DiStatis object
Bootstrap-class | Class 'Bootstrap': Bootstrap S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
Bootstrap-method | Funtion 'Bootstrap' of a DiStatis object
Bootstrap-methods | Funtion 'Bootstrap' of a DiStatis object

## -- C --

class:DiStatis | Class 'DiStatis' DiStatis S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
Comparisions.Boot | Class 'Bootstrap': Bootstrap S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
Comparisions.Boot-method | Class 'Bootstrap': Bootstrap S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
Comparisions.Boot<--method | Class 'Bootstrap': Bootstrap S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
CompPlot | Plot a 'CompPlot' of a DiStatis object
CompPlot-method | Plot a 'CompPlot' of a DiStatis object
Compromise.Coords | Class 'DiStatis' DiStatis S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
Compromise.Coords-method | Class 'DiStatis' DiStatis S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
Compromise.Coords<--method | Class 'DiStatis' DiStatis S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
Compromise.Matrix | Class 'DiStatis' DiStatis S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
Compromise.Matrix-method | Class 'DiStatis' DiStatis S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
Compromise.Matrix<--method | Class 'DiStatis' DiStatis S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
Coord.Select | Class 'SelectVar' S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset) SelectVar to DiStatis object.
Coord.Select-method | Class 'SelectVar' S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset) SelectVar to DiStatis object.
Coord.Select<--method | Class 'SelectVar' S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset) SelectVar to DiStatis object.

## -- D --

DiStatis | 'DiStatis' of a DiStatis object High level constructor of DiStatis class object
DiStatis-class | Class 'DiStatis' DiStatis S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
DiStatis-methods | 'DiStatis' of a DiStatis object High level constructor of DiStatis class object

## -- E --

EigValues.Boot | Class 'Bootstrap': Bootstrap S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
EigValues.Boot-method | Class 'Bootstrap': Bootstrap S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
EigValues.Boot<--method | Class 'Bootstrap': Bootstrap S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
Elipses.Boot | Class 'Bootstrap': Bootstrap S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
Elipses.Boot-method | Class 'Bootstrap': Bootstrap S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
Elipses.Boot<--method | Class 'Bootstrap': Bootstrap S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
Euclid.Im | Class 'DiStatis' DiStatis S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
Euclid.Im-method | Class 'DiStatis' DiStatis S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
Euclid.Im<--method | Class 'DiStatis' DiStatis S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)

## -- G --

GroupProj | 'GroupProj' of SelectVar object
GroupProj-class | Class 'GroupProj' GroupProj S4 class (kimod: k-tables approach to integrate multiple Omics-Data of Multiple dataset) GroupProj to SelectVar object.
GroupProj-method | 'GroupProj' of SelectVar object
GroupProj-SelectVar-methods | 'GroupProj' of SelectVar object
Groups | Class 'GroupProj' GroupProj S4 class (kimod: k-tables approach to integrate multiple Omics-Data of Multiple dataset) GroupProj to SelectVar object.
Groups-method | Class 'GroupProj' GroupProj S4 class (kimod: k-tables approach to integrate multiple Omics-Data of Multiple dataset) GroupProj to SelectVar object.
Groups<--method | Class 'GroupProj' GroupProj S4 class (kimod: k-tables approach to integrate multiple Omics-Data of Multiple dataset) GroupProj to SelectVar object.

## -- I --

Inertia.Boot | Class 'Bootstrap': Bootstrap S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
Inertia.Boot-method | Class 'Bootstrap': Bootstrap S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
Inertia.Boot<--method | Class 'Bootstrap': Bootstrap S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
Inertia.comp | Class 'DiStatis' DiStatis S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
Inertia.comp-method | Class 'DiStatis' DiStatis S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
Inertia.comp<--method | Class 'DiStatis' DiStatis S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
Inertia.RV | Class 'DiStatis' DiStatis S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
Inertia.RV-method | Class 'DiStatis' DiStatis S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
Inertia.RV<--method | Class 'DiStatis' DiStatis S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)

## -- L --

List.Selec.Est | Class 'SelectVar' S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset) SelectVar to DiStatis object.
List.Selec.Est-method | Class 'SelectVar' S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset) SelectVar to DiStatis object.
List.Selec.Est<--method | Class 'SelectVar' S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset) SelectVar to DiStatis object.
List.Selec.Var | Class 'SelectVar' S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset) SelectVar to DiStatis object.
List.Selec.Var-method | Class 'SelectVar' S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset) SelectVar to DiStatis object.
List.Selec.Var<--method | Class 'SelectVar' S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset) SelectVar to DiStatis object.

## -- N --

NCI60Selec | Microarray gene expression profiles of the NCI 60 cell lines from 4 different platforms.
NCI60Selec_ESet | Microarray gene expression profiles of the NCI 60 cell lines from 4 different platforms.

## -- P --

PanelPlot | Plot a 'PanelPlot' of a DiStatis object
PanelPlot-method | Plot a 'PanelPlot' of a DiStatis object
print-method | 'print' or 'summary' a Bootstrap object
print-method | 'print.DiStatis' a DiStatis object Generic Print/Summary method for DiStatis class output visualization.
print-method | 'print.GP' a GroupProj object Generic print.GP method for GroupProj class output visualization.
print-method | 'print.SV' a SelectVar object Generic Print/Summary method for SelectVar class output visualization.
print.Bootstrap | 'print' or 'summary' a Bootstrap object
print.DiStatis | 'print.DiStatis' a DiStatis object Generic Print/Summary method for DiStatis class output visualization.
print.GP | 'print.GP' a GroupProj object Generic print.GP method for GroupProj class output visualization.
print.SV | 'print.SV' a SelectVar object Generic Print/Summary method for SelectVar class output visualization.
ProyGroups | Class 'GroupProj' GroupProj S4 class (kimod: k-tables approach to integrate multiple Omics-Data of Multiple dataset) GroupProj to SelectVar object.
ProyGroups-method | Class 'GroupProj' GroupProj S4 class (kimod: k-tables approach to integrate multiple Omics-Data of Multiple dataset) GroupProj to SelectVar object.
ProyGroups<--method | Class 'GroupProj' GroupProj S4 class (kimod: k-tables approach to integrate multiple Omics-Data of Multiple dataset) GroupProj to SelectVar object.

## -- Q --

QRO.Boot | Class 'Bootstrap': Bootstrap S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
QRO.Boot-method | Class 'Bootstrap': Bootstrap S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
QRO.Boot<--method | Class 'Bootstrap': Bootstrap S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)

## -- R --

Ratios.Boot | Class 'Bootstrap': Bootstrap S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
Ratios.Boot-method | Class 'Bootstrap': Bootstrap S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
Ratios.Boot<--method | Class 'Bootstrap': Bootstrap S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
RQO | Class 'DiStatis' DiStatis S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
RQO-method | Class 'DiStatis' DiStatis S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
RQO<--method | Class 'DiStatis' DiStatis S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
RV | Class 'DiStatis' DiStatis S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
RV-method | Class 'DiStatis' DiStatis S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
RV<--method | Class 'DiStatis' DiStatis S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
RVPlot | Plot a 'RVPlot' of a DiStatis object
RVPlot-method | Plot a 'RVPlot' of a DiStatis object

## -- S --

SelectVar | Function 'SelectVar' of DiStatis object
SelectVar-class | Class 'SelectVar' S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset) SelectVar to DiStatis object.
SelectVar-method | Function 'SelectVar' of DiStatis object
SelectVar-methods | Function 'SelectVar' of DiStatis object
SortList | Class 'GroupProj' GroupProj S4 class (kimod: k-tables approach to integrate multiple Omics-Data of Multiple dataset) GroupProj to SelectVar object.
SortList-method | Class 'GroupProj' GroupProj S4 class (kimod: k-tables approach to integrate multiple Omics-Data of Multiple dataset) GroupProj to SelectVar object.
SortList<--method | Class 'GroupProj' GroupProj S4 class (kimod: k-tables approach to integrate multiple Omics-Data of Multiple dataset) GroupProj to SelectVar object.
Stability.Boot | Class 'Bootstrap': Bootstrap S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
Stability.Boot-method | Class 'Bootstrap': Bootstrap S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
Stability.Boot<--method | Class 'Bootstrap': Bootstrap S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
summary-method | 'print.Bootstrap' or 'summary.Bootstrap' a Bootstrap object
summary-method | 'summary.DiStatis' a DiStatis object
summary-method | 'summary.GP' a GroupProj object
summary-method | 'summary' a SelectVar object Generic Print/Summary method for SelectVar class output visualization.
summary.Bootstrap | 'print.Bootstrap' or 'summary.Bootstrap' a Bootstrap object
summary.DiStatis | 'summary.DiStatis' a DiStatis object
summary.GP | 'summary.GP' a GroupProj object
summary.SV | 'summary' a SelectVar object Generic Print/Summary method for SelectVar class output visualization.

## -- T --

Table.Select | Class 'SelectVar' S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset) SelectVar to DiStatis object.
Table.Select-method | Class 'SelectVar' S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset) SelectVar to DiStatis object.
Table.Select<--method | Class 'SelectVar' S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset) SelectVar to DiStatis object.
Trajectories | Class 'DiStatis' DiStatis S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
Trajectories-method | Class 'DiStatis' DiStatis S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
Trajectories<--method | Class 'DiStatis' DiStatis S4 class (kimod: k-tables approach to integrate multiple Omics-Data Multiple dataset)
TrajPlot | Plot a 'TrajPlot' of a DiStatis object
TrajPlot-method | Plot a 'TrajPlot' of a DiStatis object

## -- W --

winesassesors | Description of a set of wines by a group of expert assessors.