Package: ideal
Type: Package
Title: Interactive Differential Expression AnaLysis
Version: 1.0.0
Date: 2017-04-04
Authors@R: c(person("Federico", "Marini", email =
        "marinif@uni-mainz.de", role = c("aut", "cre")))
Maintainer: Federico Marini <marinif@uni-mainz.de>
Description: This package provides functions for an Interactive
        Differential Expression AnaLysis of RNA-sequencing datasets, to
        extract quickly and effectively information downstream the step
        of differential expression. A Shiny application encapsulates
        the whole package.
License: MIT + file LICENSE
LazyData: TRUE
Depends: topGO
Imports: DESeq2, SummarizedExperiment, GenomicRanges, IRanges,
        S4Vectors, ggplot2 (>= 2.0.0), d3heatmap, pheatmap,
        pcaExplorer, IHW, gplots, UpSetR, goseq, stringr, plyr, dplyr,
        limma, GOstats, GO.db, AnnotationDbi, shiny (>= 0.12.0),
        shinydashboard, shinyBS, DT, rentrez, rintrojs, knitr,
        rmarkdown, shinyAce, BiocParallel, grDevices, methods
Suggests: testthat, BiocStyle, airway, org.Hs.eg.db,
        TxDb.Hsapiens.UCSC.hg38.knownGene, DEFormats, edgeR
URL: https://github.com/federicomarini/ideal
BugReports: https://github.com/federicomarini/ideal/issues
biocViews: GeneExpression, DifferentialExpression, RNASeq, Sequencing,
        Visualization, QualityControl, GUI, GeneSetEnrichment,
        ReportWriting
VignetteBuilder: knitr
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2017-04-25 01:58:18 UTC; biocbuild
Author: Federico Marini [aut, cre]
Built: R 3.4.0; ; 2017-04-25 04:53:03 UTC; windows
