# Application of gene classifiers

## Documentation for package ‘geneClassifiers’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

bracket-method | Extract
ClassifierParameters | An S4 class to store classifier parameters.
ClassifierResults | An S4 class to store classifier results.
dim-method | Dimensions of an Object
exampleMAS5 | Example MAS5.0 ExpressionSet
FixedExpressionData | An S4 class to store classifier parameters.
getBatchCorrection | Obtain the batch correction status for a classifier result.
getBatchCorrection-method | Obtain the batch correction status for a classifier result.
getCitations | Obtain citations to the classifier
getCitations-method | Obtain citations to the classifier
getClassifications | Obtain classifier classifications.
getClassifications-method | Obtain classifier classifications.
getClassifier | Obtain a classifier definition.
getClassifier-method | Obtain a classifier definition.
getDecisionBoundaries | Obtain the decision boundaries defined for the classifier.
getDecisionBoundaries-method | Obtain the decision boundaries defined for the classifier.
getDescription | Obtain classifiers' description.
getDescription-method | Obtain classifiers' description.
getEventChain | Obtain classifiers' event chain.
getEventChain-method | Obtain classifiers' event chain.
getIntercept | Obtain classifiers' intercept.
getIntercept-method | Obtain classifiers' intercept.
getMeans | Obtain classifiers' reference means.
getMeans-method | Obtain classifiers' reference means.
getName | Obtain object names.
getName-method | Obtain object names.
getNormalizationMethod | Obtain normalization method
getNormalizationMethod-method | Obtain normalization method
getNormalizationMethods | Obtain normalization method
getProbeNames | Obtain probe-set names.
getProbeNames-method | Obtain probe-set names.
getScores | Obtain classifier score.
getScores-method | Obtain classifier score.
getSds | Obtain classifiers' reference standard deviations.
getSds-method | Obtain classifiers' reference standard deviations.
getTargetValue | Obtain the targetValue
getTargetValue-method | Obtain the targetValue
getTrainingData | Obtain classifier training data.
getTrainingData-method | Obtain classifier training data.
getWeightingType | Obtain the weighting type used to obtain a classifier result.
getWeightingType-method | Obtain the weighting type used to obtain a classifier result.
getWeights | Obtain classifier weights.
getWeights-method | Obtain classifier weights.
runClassifier | Perform classification.
runClassifier-method | Perform classification.
setNormalizationMethod | Prepare data.
showClassifierList | Show classifier names and descriptions.
[-method | Extract
[[-method | Extract