Package: coMET
Type: Package
Title: coMET: visualisation of regional epigenome-wide association scan
        (EWAS) results and DNA co-methylation patterns
Version: 1.8.0
Date: 2016-07-04
Author: Tiphaine C. Martin, Thomas Hardiman, Idil Yet, Pei-Chien Tsai, Jordana T. Bell
Maintainer: Tiphaine Martin <tiphaine.martin@kcl.ac.uk>
Description: Visualisation of EWAS results in a genomic region. In addition to phenotype-association P-values, coMET also generates plots of co-methylation patterns and provides a series of annotation tracks. It can be used to other omic-wide association scans as long as the data can be translated to genomic level and for any species.
Depends: R, grid, utils, biomaRt, Gviz, psych, ggbio, trackViewer
Suggests: knitr, RUnit, BiocGenerics, BiocStyle
Imports: colortools, hash, grDevices, gridExtra, rtracklayer, IRanges,
        S4Vectors, GenomicRanges, ggplot2, stats, corrplot
License: GPL (>= 2)
URL: http://epigen.kcl.ac.uk/comet
biocViews: Software, DifferentialMethylation, Visualization,
        Sequencing, Genetics, FunctionalGenomics, Microarray,
        MethylationArray, MethylSeq, ChIPSeq, DNASeq, RiboSeq, RNASeq,
        ExomeSeq, DNAMethylation, GenomeWideAssociation
VignetteBuilder: knitr
NeedsCompilation: no
Repository: Bioconductor
Packaged: 2017-04-25 01:01:37 UTC; biocbuild
Built: R 3.4.0; ; 2017-04-25 03:09:28 UTC; windows
