# Package for high-throughput data processing, outlier detection, noise removal and dynamic modeling

## Documentation for package ‘biosvd’ version 2.12.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

biosvd-package | Package for high-throughput data processing, outlier detection, noise removal and dynamic modeling
apply | The Eigensystem class
assayColorMap | The EigensystemPlotParam class
assayColorMap<- | Set assayColorMap for object of EigensystemPlotParam
assaycorrelations | The Eigensystem class
assayMatrix | The Eigensystem class
biosvd | Package for high-throughput data processing, outlier detection, noise removal and dynamic modeling
colorIdFeatures | The Eigensystem class
compute | Compute the eigensystem for a feature by assay matrix
compute-method | Compute the eigensystem for a feature by assay matrix
contrast | The EigensystemPlotParam class
contrast<- | Set contrast for object of EigensystemPlotParam
eigenassays | The Eigensystem class
eigenexpressions | The Eigensystem class
eigenfeatures | The Eigensystem class
Eigensystem | The Eigensystem class
Eigensystem-class | The Eigensystem class
EigensystemPlotParam | The EigensystemPlotParam class
EigensystemPlotParam-class | The EigensystemPlotParam class
entropy | The Eigensystem class
exclude | Excludes specified eigenfeatures/eigenassays from the data
exclude-method | Excludes specified eigenfeatures/eigenassays from the data
excludeEigenfeatures | The Eigensystem class
featureColorMap | The EigensystemPlotParam class
featureColorMap<- | Set featureColorMap for object of EigensystemPlotParam
featurecorrelations | The Eigensystem class
featureMatrix | The Eigensystem class
figure | The EigensystemPlotParam class
figure<- | Set figure for object of EigensystemPlotParam
filenames | The EigensystemPlotParam class
filenames<- | Set filenames for object of EigensystemPlotParam
fractions | The Eigensystem class
HeLaData | Human HeLa Cell Cycle Expression
matrix | The Eigensystem class
negativeValues | The EigensystemPlotParam class
negativeValues<- | Set negativeValues for object of EigensystemPlotParam
palette | The EigensystemPlotParam class
palette<- | Set palette for object of EigensystemPlotParam
path | The EigensystemPlotParam class
path<- | Set path for object of EigensystemPlotParam
plot | Generate visualizations of the eigensystem
plot-method | Generate visualizations of the eigensystem
plots | The EigensystemPlotParam class
plots<- | Set plots for object of EigensystemPlotParam
prefix | The EigensystemPlotParam class
prefix<- | Set prefix for object of EigensystemPlotParam
project | Projects the data onto one or two eigenfeatures and eigenassays
project-method | Projects the data onto one or two eigenfeatures and eigenassays
report | Creates a report of the eigensystem
report-method | Creates a report of the eigensystem
show-method | The Eigensystem class
show-method | The EigensystemPlotParam class
signMatrix | The Eigensystem class
StarvationData | Human HeLa Cell Cycle Expression
whichAssays | The EigensystemPlotParam class
whichAssays<- | Set whichAssays for object of EigensystemPlotParam
whichEigenassays | The EigensystemPlotParam class
whichEigenassays<- | Set whichEigenassays for object of EigensystemPlotParam
whichEigenfeatures | The EigensystemPlotParam class
whichEigenfeatures<- | Set whichEigenfeatures for object of EigensystemPlotParam
whichFeatures | The EigensystemPlotParam class
whichFeatures<- | Set whichFeatures for object of EigensystemPlotParam
whichPolarAxes | The EigensystemPlotParam class
whichPolarAxes<- | Set whichPolarAxes for object of EigensystemPlotParam
YeastData | Yeast Cell Cycle Expression