d78e5d4bfb7b395cc500293e255d3365 *CITATION
62243eead2454f05fb926c776ebea1fc *DESCRIPTION
43efaf81f65fd2b2adfef4a4020e9fec *INDEX
255f0c4ff89aef5ea79b4526fcab2071 *Meta/Rd.rds
3116b09a69f681bcdc57557b4c235db7 *Meta/features.rds
07a0ef49b5bc00bebc35ec200ca9afd6 *Meta/hsearch.rds
10ede09223ca32a2b88cc27782f44b27 *Meta/links.rds
144736774c579ddc3e06618a16d0c838 *Meta/nsInfo.rds
d5d9fda134f60472906167e72c1fe5ba *Meta/package.rds
c6f2c7b819072a158a5969d419f69a6d *Meta/vignette.rds
11089d8861e0903a1fa056ccc1a0d70d *NAMESPACE
0b6e713f89ef2eaf45147fc12425bccd *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/VariantAnnotation
20df2fd9ab1a4c676332a7feca6882f5 *R/VariantAnnotation.rdb
f8a0434d159fb98a99b079c581fb372e *R/VariantAnnotation.rdx
adaba47b526b3386505b0eeb393c6706 *doc/VariantAnnotation.R
dda80bc19d7c0e9ef2eb07bf13a0139e *doc/VariantAnnotation.Rnw
a0910c41a75f2f8c8d652513d307b985 *doc/VariantAnnotation.pdf
7ec5fad4a35b571dcd4a2bf5bd3789de *doc/filterVcf.R
926fb0bcdcaa94df63769fd878159035 *doc/filterVcf.Rnw
248585b17eac67cc3de6cf5d6ef13db5 *doc/filterVcf.pdf
879da333b138ca5d31f64b6639487e51 *doc/index.html
be4950fb484e1070402e189e254b1a92 *extdata/chr22.vcf.gz
c303d8a0cc7e6314b5f42348221b0d3b *extdata/chr22.vcf.gz.tbi
a4ca21413e322997ed17c5429e65b9ca *extdata/chr7-sub.vcf.gz
dc5c0ecc784ff39509a164f3020b72f8 *extdata/chr7-sub.vcf.gz.tbi
b325a60a320b6aebb41d41d1dafb9c6d *extdata/ex2.vcf
277341ce20f406ab09a0c23c6bd0d86f *extdata/gl_chr1.vcf
f2a805083bd71e155f977ffb49df2cd5 *extdata/h1187-10k.vcf.gz
fab30e49f0d054d462f8e1737844b204 *extdata/h1187-10k.vcf.gz.tbi
dac0f427ab59994c11859f2b09bab618 *extdata/hapmap_exome_chr22.vcf.gz
ff0775ab73d21645fa114d487e5ebcfd *extdata/hapmap_exome_chr22.vcf.gz.tbi
48852d332eb21dd639b4c6be53762357 *extdata/structural.vcf
eb51a98a4369f444803637cc86cbb2e5 *help/AnIndex
f9013e07343cb5e09416a9a6df4f401e *help/VariantAnnotation.rdb
8d9cac291587d5f902176f29f6c25482 *help/VariantAnnotation.rdx
a762a83c8c8174d4022f1d76abcb2b65 *help/aliases.rds
eef1ab65e0e564c48755e17a9a90afa9 *help/paths.rds
3324357d59bf6ea8c2521d04b529bbb6 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
11df0d5ad285ec396113213e480c791d *libs/i386/VariantAnnotation.dll
d7d91d15c920df27e012b2d4889402e2 *libs/x64/VariantAnnotation.dll
17f1c6f05e7a9ff7756b6efabce3f745 *scripts/test_Rplinkseq.R
b7a9592a5de31dd84a3f7e8d1e0332de *unitTests/cases/FORMAT_header_no_SAMPLEs.vcf
6e6064d7c429a35bc80235a253eed6f3 *unitTests/cases/VarScan_header.vcf
0c5f14796bf4eb3683ceff8e559f43d7 *unitTests/cases/banded_gvcf.vcf
1e72c29c93e39910d59e569aad8db3db *unitTests/cases/expand.vcf
b94fb85e5ef300d87ab437d75f899b5a *unitTests/cases/fewer-FORMAT-than-GENO.vcf
3e81314c823a90ca24120330c546e7b0 *unitTests/cases/missing-FORMAT-metadata-elt.vcf
ba4c3b28d5f63740fda11e70a19eccd7 *unitTests/cases/mixedStructural.vcf
0230db3391a4a664fd5e2236fd0e5a92 *unitTests/cases/multiple_INFO_fields.vcf
752d9d47c17d8f66791ce8804d88dbf6 *unitTests/cases/negative_FORMAT_Number.vcf
39d8ae8aa155e4bac07e9215017143e7 *unitTests/cases/no_FORMAT_column.vcf
4be0f539f13136116e1df4292adeb571 *unitTests/cases/no_GENO_row.vcf
a99d3b281abdd928c30fd147de3848a0 *unitTests/cases/no_INFO_header.vcf
0c5bd63cfafbad13a8591b4963e0d411 *unitTests/cases/unspecified_INFO_FORMAT_fields.vcf
0b5b4448b336d5a5b56d18cf818f9712 *unitTests/test_SIFTandPolyPhen.R
00158d8fd4f8a5d3b57b6ffd6568a17e *unitTests/test_ScanVcfParam-class.R
4f3d0d9a4cabe7bf6bd2f06fd5389a48 *unitTests/test_VCF-class.R
e07cf8ff3ef774a4702083cd51bb946c *unitTests/test_VRanges-class.R
ff0b44d8aee8150a56bff44075467583 *unitTests/test_expand-methods.R
9561c767f5acb5fc74cd359c678612cf *unitTests/test_filterVcf.R
7c00151d0528b740a94ddb9a8504898a *unitTests/test_genotypeToSnpMatrix.R
2c2205ed5a0c6d352887365ce90f025a *unitTests/test_isSNV.R
3fb1e09a0eb712fc6dac04bac8c2bf3a *unitTests/test_locateVariants-methods.R
b92e0e7b951b75b850b37d0204efa1f5 *unitTests/test_predictCoding-methods.R
f674942fdd74339349c66154a0a324e2 *unitTests/test_readVcf-methods.R
8afab6fc17e9f3105b9b13665c8d10de *unitTests/test_scanVcf.R
e45debe5cc9e5a797032c5ece476a74c *unitTests/test_snpSummary.R
d98bfd1bf44ccafabe740b9ae42d1208 *unitTests/test_summarizeVariants-methods.R
63c02835c8ecc7f75d976dff37e41444 *unitTests/test_writeVcf-methods.R
