# Generated by roxygen2: do not edit by hand

export(DBanalysis)
export(DBresult)
export(DBresult.cluster)
export(TCA)
export(TCAFromSummarizedExperiment)
export(clustCenters)
export(clustCluster)
export(clustData)
export(clustMembership)
export(clustResults)
export(countReads)
export(genomicFeature)
export(peakreference)
export(tcTable)
export(timeclust)
export(timeclustplot)
export(timecourseTable)
exportClasses(TCA)
exportClasses(clust)
exportMethods('counts<-')
exportMethods(clustCenters)
exportMethods(clustCluster)
exportMethods(clustData)
exportMethods(clustMembership)
exportMethods(clustResults)
exportMethods(counts)
exportMethods(design)
exportMethods(tcTable)
import(GenomicRanges)
import(SummarizedExperiment)
import(cluster)
import(e1071)
import(edgeR)
import(ggplot2)
import(grid)
import(locfit)
import(reshape2)
importFrom(BiocGenerics,"counts<-")
importFrom(BiocGenerics,counts)
importFrom(BiocGenerics,design)
importFrom(GenomicAlignments,summarizeOverlaps)
importFrom(IRanges,IRanges)
importFrom(Rsamtools,BamFile)
importFrom(Rsamtools,BamFileList)
importFrom(grDevices,rainbow)
importFrom(methods,new)
importFrom(methods,validObject)
importFrom(stats,as.dist)
importFrom(stats,complete.cases)
importFrom(stats,cor)
importFrom(stats,cutree)
importFrom(stats,hclust)
importFrom(stats,kmeans)
importFrom(stats,model.matrix)
importFrom(stats,sd)
importFrom(stats,time)
importFrom(utils,capture.output)
importFrom(utils,read.table)
