DBanalysis              Perform differential binding analysis
DBresult                This function performs differetial analysis by
                        fitting read Perform likelihood ratio tests and
                        extract the differential analysis results
TCA-class               TCA class and constructor
TCA.accessors           Accessors to extract slots of a TCA class.
clust-class             clust class
clust.accessors         Accessors to extract slots of a clust class.
countReads              count mapped reads overlap genomic intervals
counts                  Extracts counts of a TCA object.
countsTable             An example read Counts table
experiment              An example experiment design without BAM file
                        infomration
experiment_BAMfile      An example experiment design with BAM file
                        infomration
genomicIntervals        An example reference genomic regions
peakreference           combine and merge multiple BED files
tca_ATAC                An example TCA object
timeclust               time couse data clustering
timeclustplot           Plot clustering results for time course data.
timecourseTable         constructs time course table for clustering
                        analysis
