SeqVarTools-package	SeqVarTools-package
allele-methods	allele-methods
alleleDosage	getGenotype
alleleDosage,SeqVarGDSClass,list-method	getGenotype
alleleDosage,SeqVarGDSClass,numeric-method	getGenotype
alleleFrequency	alleleFrequency
alleleFrequency,SeqVarGDSClass-method	alleleFrequency
altChar	allele-methods
altChar,SeqVarGDSClass-method	allele-methods
altDosage	getGenotype
altDosage,SeqVarGDSClass-method	getGenotype
alternateAlleleDetection	alternateAlleleDetection
alternateAlleleDetection,SeqVarData,SeqVarData-method	alternateAlleleDetection
applyMethod	applyMethod
applyMethod,SeqVarGDSClass,function,character-method	applyMethod
applyMethod,SeqVarGDSClass,function,GRanges-method	applyMethod
applyMethod,SeqVarGDSClass,function,missing-method	applyMethod
applyMethod,SeqVarGDSClass,function,numeric-method	applyMethod
countSingletons	countSingletons
countSingletons,SeqVarGDSClass-method	countSingletons
duplicateDiscordance	duplicateDiscordance
duplicateDiscordance,SeqVarData,missing-method	duplicateDiscordance
duplicateDiscordance,SeqVarData,SeqVarData-method	duplicateDiscordance
getGenotype	getGenotype
getGenotype,SeqVarGDSClass-method	getGenotype
getGenotypeAlleles	getGenotype
getGenotypeAlleles,SeqVarGDSClass-method	getGenotype
getVariableLengthData	getVariableLengthData
getVariableLengthData,SeqVarGDSClass,character-method	getVariableLengthData
granges	SeqVarData-class
granges,SeqVarData-method	SeqVarData-class
heterozygosity	heterozygosity
heterozygosity,SeqVarGDSClass-method	heterozygosity
hethom	heterozygosity
hethom,SeqVarGDSClass-method	heterozygosity
homozygosity	heterozygosity
homozygosity,SeqVarGDSClass-method	heterozygosity
hwe	hwe
hwe,SeqVarGDSClass-method	hwe
inbreedCoeff	inbreedCoeff
inbreedCoeff,SeqVarGDSClass-method	inbreedCoeff
isSNV	isSNV
isSNV,SeqVarGDSClass-method	isSNV
isVariant	isVariant
isVariant,SeqVarGDSClass-method	isVariant
meanBySample	meanBySample
meanBySample,SeqVarGDSClass-method	meanBySample
mendelErr	mendelErr
mendelErr,SeqVarGDSClass-method	mendelErr
missingGenotypeRate	missingGenotypeRate
missingGenotypeRate,SeqVarGDSClass-method	missingGenotypeRate
nAlleles	allele-methods
nAlleles,SeqVarGDSClass-method	allele-methods
pca	pca
pca,SeqVarGDSClass-method	pca
pedigree	pedigree
refChar	allele-methods
refChar,SeqVarGDSClass-method	allele-methods
refDosage	getGenotype
refDosage,SeqVarGDSClass-method	getGenotype
refFrac	refFrac
refFrac,SeqVarGDSClass-method	refFrac
refFracOverHets	refFrac
refFracOverHets,SeqVarGDSClass-method	refFrac
refFracPlot	refFrac
refFracPlot,SeqVarGDSClass-method	refFrac
regression	regression
regression,SeqVarData-method	regression
sampleData	SeqVarData-class
sampleData,SeqVarData-method	SeqVarData-class
sampleData<-	SeqVarData-class
sampleData<-,SeqVarData,AnnotatedDataFrame-method	SeqVarData-class
SeqVarData	SeqVarData-class
SeqVarData-class	SeqVarData-class
SeqVarTools	SeqVarTools-package
setVariantID	setVariantID
titv	titv
titv,SeqVarGDSClass-method	titv
variantData	SeqVarData-class
variantData,SeqVarData-method	SeqVarData-class
variantData<-	SeqVarData-class
variantData<-,SeqVarData,AnnotatedDataFrame-method	SeqVarData-class
