206783b16da1df32879130d18d8cbb68 *DESCRIPTION
627b6c16b37a59353cf4b21b802843a6 *INDEX
3e1871e6f02699e0c10a40168bc35250 *LICENSE
235b5ba04acbdaef3e70e66648537c8c *Meta/Rd.rds
3116b09a69f681bcdc57557b4c235db7 *Meta/features.rds
fd8a8c6b4c5eda5777da61536b09775f *Meta/hsearch.rds
7b435bfb729c8a4f12e5c33ec8528bf3 *Meta/links.rds
aca9b6890c756aa2e95aac5e3cb763fd *Meta/nsInfo.rds
8f25a598d7d0816f737482821a8b7969 *Meta/package.rds
d5812a188e3ca6f8f2e78c3afbd1d8f5 *Meta/vignette.rds
51fb55258b68fa972e858e0499797e0b *NAMESPACE
d645186e928e9e91af4553ce79293822 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/Rsamtools
fa59e2d6e0b284205032e63f36a7345c *R/Rsamtools.rdb
b84e8d3df377fa44861e37d6454d2481 *R/Rsamtools.rdx
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25a019557bb5685d766ed61dc4603a74 *extdata/ce2dict1.fa.fai
7df758adaaf5b6d487ac22e4dba6c31e *extdata/ex1.bam
1888862b9d22ddb8ca663eabc41c78f0 *extdata/ex1.bam.bai
be9391b9eb67b71c52b8b62aa8729b8e *extdata/ex1.bcf
db1d9a70089ed6a746574898cfbc450a *extdata/ex1.bcf.bci
96db184679450f1ff65e95a5a6712d27 *extdata/ex1.sam
f9a7ff6f4b559b5d332e19a30c3f86b0 *extdata/example.gtf.gz
5d8c67b81c8cc21846c6afae879ca705 *extdata/example.gtf.gz.tbi
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c64f2c6168c6aba12b5c82e7dfa74afe *extdata/example_from_SAM_Spec.bam.bai
9d18ffdc11a18e91d5c64b718602c1ac *extdata/example_from_SAM_Spec.sam
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6f8a5015a9786ce86a965848a9633aa6 *extdata/no_which_whole_file.sam
1da9e8b047ed977ccb5de772b2462696 *extdata/olaps.Rda
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5494fd19934144f67d2a85b4ab89bcd4 *extdata/querybins.bam
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6f871a9c2a93270190defcd22f31cd64 *extdata/querybins.sam
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da8444454b8554ca98d7c6e31d0a6f1b *extdata/revbins.bam.bai
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46d5ed9ac766376dee08e14d107dabfd *extdata/samtools-github.txt
23294b7cc9de134693fe56665ad54ca9 *extdata/slxMaq09_urls.txt
5ab7017a87bd6ba99c768a9155f1d8f6 *extdata/tagfilter.bam
5e643f92d1e20fffae85d626be5b0d95 *extdata/tagfilter.bam.bai
e923e5eab408e6617e72226c7875b974 *extdata/tagfilter.sam
120ab4b3e5c957a44ce695f09af76618 *extdata/tiny.bam
b99c7ee3f818e3ad21ab80198ab09e55 *extdata/tiny.bam.bai
7aee88510e5c4378a271285877a21c66 *extdata/tiny.sam
ce71aff63ec52a72d26cadef6341e0ac *extdata/tophat/README
a3aac6bef3effd53505adb9b2e013d6a *extdata/tophat/accepted_hits.sam
27b6e5502996fbf2dbbc069ee9bf84f7 *extdata/tophat/coverage.wig
4ece538c2a4c0dc91de5e9967b97fd8a *extdata/tophat/junctions.bed
1712566051aaef80c6f90cd37ec2f162 *help/AnIndex
f981e653a2b8d9c28e0b42f665a6fbf5 *help/Rsamtools.rdb
0474b1ae68cf91ede50721dc1a83c297 *help/Rsamtools.rdx
10f6e94592d668f13aa9548a1fbb7172 *help/aliases.rds
a07b38363b80e4bbd8d62df96776b2ac *help/paths.rds
1b7805b74b1ce039c4eedacfa699b4ac *html/00Index.html
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88a014074e42c5b77b199a511d0804e5 *include/samtools/bam.h
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cfa83784d8fb5e8952ca6c78f3cdbb68 *libs/x64/Rsamtools.dll
d1167f1edb9728e01f1dbb33c4f84b03 *scripts/BamViews-1000g.R
7c89145d838d01d56ea7f705a5517a7a *scripts/features.R
76f503c5cf3165c198c9b71a2a0260f9 *scripts/remote_test.R
0bf0afc1ae9722c9554c6f6dbd8999f7 *scripts/update-samtools.sh
7b8ce960ff8555ae68a9c51007e1542c *unitTests/cases/ex1.sam.gz
7df758adaaf5b6d487ac22e4dba6c31e *unitTests/cases/ex1_noindex.bam
6a5958f08f38d0ec9edaa102fdef65d3 *unitTests/cases/ex1_shuf1000.bam
7c1ac84cf8c553c0503ac44ec535ef39 *unitTests/cases/ex1_shuf1000.bam.bai
0dd5eed996f57fa6cabc6e61912b7f6d *unitTests/cases/ex1_unsort.bam
d41d8cd98f00b204e9800998ecf8427e *unitTests/cases/ex1_zero_index.bam.bai
556492a4e08d4952bf5eef892330500d *unitTests/cases/no_SAMPLE_header.vcf
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7f2ccec39e20c8cc23ce7514a454c803 *unitTests/cases/plp_refskip.bam
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0acc8fab298ccbef8f5bde22a2af0282 *unitTests/test_bam_count.R
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589f3f7e3a7e8f8f8ccfc1ab28b1d452 *unitTests/test_phred2ASCIIOffset.R
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343295ff7ce87602517abdecae18c4e2 *unitTests/test_pileup_revbins.R
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0700f9e7951020e83d3633412a68d9cc *unitTests/test_tagfilter.R
36f997e813e6c6a5b9e14745c2a138fd *unitTests/test_testPairedEndBam.R
09319872279858389407e593e6e289d5 *unitTests/test_utilities.R
a8fc88d695f429bf8ec9ce89c95ba422 *usretc/i386/Rsamtools.mk
a8fc88d695f429bf8ec9ce89c95ba422 *usretc/x64/Rsamtools.mk
aee18e536d4455cfc705c18b9c9402d3 *usrlib/i386/libbam.a
04d0f5949cd5b5597a7b6012b76a4404 *usrlib/i386/libbcf.a
e0fe4e1e5e9891c90c5c5ceecd905a31 *usrlib/i386/libtabix.a
bea128546350a2a0c10eefb7c7ed2dc7 *usrlib/x64/libbam.a
12ac071b6251c106c45088338323acb0 *usrlib/x64/libbcf.a
2f40553026db01cc91c950efce3f837f *usrlib/x64/libtabix.a
