# Tools for making reports in various formats

## Documentation for package ‘ReportingTools’ version 2.16.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

basePath | Class '"HTMLReport"'
basePath-method | Class '"HTMLReport"'
BaseReport-class | Class '"BaseReport"'
baseUrl | Class '"HTMLReport"'
baseUrl-method | Class '"HTMLReport"'
connectionHandlers | Class '"ReportHandlers"'
CSVFile | Function for creating and initializing a CSVFile for publishing results
CSVFile-class | Class '"CSVFile"'
custHeaderPanel | Define a header panel with custom JS/CSS for a Shiny app
DataPackage | Function for creating and initializing an object of class DataPackage.
DataPackage-class | Class '"DataPackage"'
dependencies | Class '"DataPackage"'
dependencies-method | Class '"DataPackage"'
dependencies<- | Class '"DataPackage"'
dependencies<--method | Class '"DataPackage"'
fileHandlers | Class '"ReportHandlers"'
filename | Methods for getting the name of a file for a CSVFile or HTMLReport.
filename-method | Methods for getting the name of a file for a CSVFile or HTMLReport.
filename-methods | Methods for getting the name of a file for a CSVFile or HTMLReport.
fileWIndexHandlers | Class '"ReportHandlers"'
finish | Finalizing reports after publishing results
finish-method | Finalizing reports after publishing results
finish-methods | Finalizing reports after publishing results
HTMLReport | Class '"HTMLReportRef"'
HTMLReport-class | Class '"HTMLReport"'
HTMLReportRef-class | Class '"HTMLReportRef"'
knitrHandlers | Class '"ReportHandlers"'
Link | Create a table of Links
Link-method | Create a table of Links
Link-methods | Create a table of Links
makeDESeqDF | Converts DESeq results into a data frame to be published
makeOldHTMLReport | Creating and initializing an HTMLReport object
mockRnaSeqData | A counts table of mock RNA-deq data in mouse.
modifyReportDF | Decorate the Basic data.frame Representation of an Object
modifyReportDF-method | Decorate the Basic data.frame Representation of an Object
modifyReportDF-methods | Decorate the Basic data.frame Representation of an Object
name | Class '"BaseReport"'
name-method | Class '"BaseReport"'
name<--method | Class '"BaseReport"'
name<--method | Class '"CSVFile"'
name<--method | Class '"HTMLReport"'
objectToHTML | Transform R objects into HTML form to be inserted in HTML reports
objectToHTML-method | Transform R objects into HTML form to be inserted in HTML reports
objectToHTML-methods | Transform R objects into HTML form to be inserted in HTML reports
page | Class '"HTMLReport"'
page-method | Class '"HTMLReport"'
page<- | Class '"HTMLReport"'
page<--method | Class '"HTMLReport"'
path | Class '"BaseReport"'
path-method | Class '"BaseReport"'
path-method | Class '"DataPackage"'
path-method | Class '"HTMLReport"'
path-method | Class '"HTMLReportRef"'
path-method | Class '"ReportHandlers"'
publish | Methods for publishing a variety of data types in selected output formats
publish-method | Class '"HTMLReportRef"'
publish-method | Methods for publishing a variety of data types in selected output formats
publish-methods | Methods for publishing a variety of data types in selected output formats
readReport | Read in an Existing Report
reportDirectory | Class '"BaseReport"'
reportDirectory-method | Class '"BaseReport"'
reportDirectory<- | Class '"BaseReport"'
reportDirectory<--method | Class '"BaseReport"'
ReportHandlers-class | Class '"ReportHandlers"'
reporting.theme | Color theme for use in ReportingTools
reporting.theme.alternate | Alternate color theme for use in ReportingTools
shinyHandlers | Class '"ReportHandlers"'
show-method | Class '"BaseReport"'
show-method | Class '"HTMLReport"'
show-method | Class '"HTMLReportRef"'
title | Class '"BaseReport"'
title-method | Class '"BaseReport"'
title<- | Class '"BaseReport"'
title<--method | Class '"BaseReport"'
toReportDF | Class Specific Default Behavior for Transforming Objects to data.frames
toReportDF-method | Class Specific Default Behavior for Transforming Objects to data.frames
toReportDF-methods | Class Specific Default Behavior for Transforming Objects to data.frames
url-method | Class '"HTMLReport"'
validConnection | Determine connection validity
[[-method | Class '"HTMLReportRef"'
[[<--method | Class '"HTMLReportRef"'