# Prediction of pathway-related protein-protein interaction networks

## Documentation for package ‘Path2PPI’ version 1.6.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

addReference | Add reference species
addReference-method | Class '"Path2PPI"'
ai | Data set to predict autophagy induction in _Podospora anserina_
getHybridNetwork | Get hybrid network of the predicted PPI
getHybridNetwork-method | Class '"Path2PPI"'
getPPI | Get predicted PPI
getPPI-method | Class '"Path2PPI"'
homologyScore | Computes homology scores
human.ai.irefindex | Data set to predict autophagy induction in _Podospora anserina_
human.ai.proteins | Data set to predict autophagy induction in _Podospora anserina_
initialize-method | Class '"Path2PPI"'
pa2human.ai.homologs | Data set to predict autophagy induction in _Podospora anserina_
pa2yeast.ai.homologs | Data set to predict autophagy induction in _Podospora anserina_
Path2PPI | Class '"Path2PPI"'
Path2PPI-class | Class '"Path2PPI"'
plot.Path2PPI | Plots the predicted PPI
plot.Path2PPI-method | Class '"Path2PPI"'
predictPPI | Prediction of the PPI
predictPPI-method | Class '"Path2PPI"'
removeReference | Remove reference species
removeReference-method | Class '"Path2PPI"'
show-method | Class '"Path2PPI"'
showInteraction | Information about an interaction
showInteraction-method | Class '"Path2PPI"'
showInteraction-methods | Information about an interaction
showReferences | Information about reference species
showReferences-method | Class '"Path2PPI"'
yeast.ai.irefindex | Data set to predict autophagy induction in _Podospora anserina_
yeast.ai.proteins | Data set to predict autophagy induction in _Podospora anserina_