$,MultiAssayExperiment-method	MultiAssayExperiment-methods
$<-,MultiAssayExperiment-method	MultiAssayExperiment-methods
API	API
assay,ANY,missing-method	ExperimentList-class
assay,ExperimentList,character-method	ExperimentList-class
assay,ExperimentList,missing-method	ExperimentList-class
assay,ExperimentList,numeric-method	ExperimentList-class
assay,MultiAssayExperiment,character-method	MultiAssayExperiment-class
assay,MultiAssayExperiment,missing-method	MultiAssayExperiment-class
assay,MultiAssayExperiment,numeric-method	MultiAssayExperiment-class
assay,RangedRaggedAssay,missing-method	assay-RangedRaggedAssay-missing-method
assays,ExperimentList-method	ExperimentList-class
assays,MultiAssayExperiment-method	MultiAssayExperiment-class
c,MultiAssayExperiment-method	MultiAssayExperiment-class
clusterOn	clusterOn
colData,MultiAssayExperiment-method	MultiAssayExperiment-methods
colData<-,MultiAssayExperiment,DataFrame-method	MultiAssayExperiment-methods
complete.cases,MultiAssayExperiment-method	MultiAssayExperiment-class
dim,RangedRaggedAssay-method	RangedRaggedAssay-class
dimnames,ExperimentList-method	ExperimentList-class
dimnames,MultiAssayExperiment-method	MultiAssayExperiment-class
dimnames,RangedRaggedAssay-method	RangedRaggedAssay-class
dimnames<-,RangedRaggedAssay,list-method	RangedRaggedAssay-class
disjoin,RangedRaggedAssay-method	RangedRaggedAssay-class
duplicated	MultiAssayExperiment-helpers
duplicated,MultiAssayExperiment-method	MultiAssayExperiment-helpers
ExperimentList	ExperimentList
ExperimentList,ANY-method	ExperimentList-class
ExperimentList,missing-method	ExperimentList-class
ExperimentList-class	ExperimentList-class
experiments	MultiAssayExperiment-methods
experiments,MultiAssayExperiment-method	MultiAssayExperiment-methods
experiments<-	MultiAssayExperiment-methods
experiments<-,MultiAssayExperiment,ExperimentList-method	MultiAssayExperiment-methods
hasAssay	hasAssay
intersectColumns	MultiAssayExperiment-helpers
intersectRows	MultiAssayExperiment-helpers
isEmpty,MultiAssayExperiment-method	MultiAssayExperiment-class
length,MultiAssayExperiment-method	MultiAssayExperiment-class
listToMap	mapToList
longFormat	MultiAssayExperiment-helpers
longFormat,ANY-method	MultiAssayExperiment-helpers
longFormat,ExperimentList-method	MultiAssayExperiment-helpers
longFormat,MultiAssayExperiment-method	MultiAssayExperiment-helpers
longFormat,RangedRaggedAssay-method	RangedRaggedAssay-class
mapToList	mapToList
mergeReplicates	MultiAssayExperiment-helpers
mergeReplicates,ANY-method	MultiAssayExperiment-helpers
mergeReplicates,ExperimentList-method	ExperimentList-class
mergeReplicates,MultiAssayExperiment-method	MultiAssayExperiment-helpers
mergeReplicates,RangedRaggedAssay-method	RangedRaggedAssay-class
metadata,MultiAssayExperiment-method	MultiAssayExperiment-methods
metadata<-,MultiAssayExperiment-method	MultiAssayExperiment-methods
MultiAssayExperiment	MultiAssayExperiment
MultiAssayExperiment-class	MultiAssayExperiment-class
MultiAssayExperiment-helpers	MultiAssayExperiment-helpers
MultiAssayExperiment-methods	MultiAssayExperiment-methods
names,MultiAssayExperiment-method	MultiAssayExperiment-class
pData,MultiAssayExperiment-method	MultiAssayExperiment-methods
pData<-,MultiAssayExperiment,DataFrame-method	MultiAssayExperiment-methods
prepMultiAssay	prepMultiAssay
RangedRaggedAssay	RangedRaggedAssay
RangedRaggedAssay-class	RangedRaggedAssay-class
sampleMap	MultiAssayExperiment-methods
sampleMap,MultiAssayExperiment-method	MultiAssayExperiment-methods
sampleMap<-	MultiAssayExperiment-methods
sampleMap<-,MultiAssayExperiment,DataFrame-method	MultiAssayExperiment-methods
show,ExperimentList-method	ExperimentList-class
show,MultiAssayExperiment-method	MultiAssayExperiment-class
show,RangedRaggedAssay-method	RangedRaggedAssay-class
subsetByAssay	subsetByAssay
subsetByAssay,MultiAssayExperiment-method	subsetByAssay
subsetByColData	subsetByColData
subsetByColData,MultiAssayExperiment,ANY-method	subsetByColData
subsetByColData,MultiAssayExperiment,character-method	subsetByColData
subsetByColumn	subsetByColumn
subsetByColumn,MultiAssayExperiment,List-method	subsetByColumn
subsetByColumn,MultiAssayExperiment,list-method	subsetByColumn
subsetByRow	subsetByRow
subsetByRow,MultiAssayExperiment,ANY-method	subsetByRow
subsetByRow,MultiAssayExperiment,List-method	subsetByRow
subsetByRow,MultiAssayExperiment,list-method	subsetByRow
updateObject,MultiAssayExperiment-method	MultiAssayExperiment-class
upsetSamples	upsetSamples
wideFormat	MultiAssayExperiment-helpers
wideFormat,ANY-method	MultiAssayExperiment-helpers
wideFormat,ExperimentList-method	MultiAssayExperiment-helpers
wideFormat,MultiAssayExperiment-method	MultiAssayExperiment-helpers
[,MultiAssayExperiment,ANY,ANY,ANY-method	MultiAssayExperiment-class
[,MultiAssayExperiment,ANY-method	MultiAssayExperiment-class
[,RangedRaggedAssay,ANY,ANY,ANY-method	RangedRaggedAssay-class
[,RangedRaggedAssay,ANY-method	RangedRaggedAssay-class
[,RangedRaggedAssay,GRanges,ANY,ANY-method	RangedRaggedAssay-class
[,RangedRaggedAssay,GRanges-method	RangedRaggedAssay-class
[[,MultiAssayExperiment,ANY,ANY-method	MultiAssayExperiment-methods
[[<-,MultiAssayExperiment,ANY,ANY-method	MultiAssayExperiment-methods
