# A Bioconductor package for accessing GA4GH API data servers

## Documentation for package ‘GA4GHclient’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

GA4GHclient-package | A Bioconductor package for accessing GA4GH API data server
GA4GHclient | A Bioconductor package for accessing GA4GH API data server
getBiosample | getBiosample function
getCallSet | getCallSet function
getDataset | getDataset function
getExpressionLevel | getExpressionLevel function
getFeature | getFeature function
getFeatureSet | getFeatureSet function
getIndividual | getIndividual function
getReadGroupSet | getReadGroupSet function
getReference | getReference function
getReferenceSet | getReferenceSet function
getRnaQuantification | getRnaQuantification function
getRnaQuantificationSet | getRnaQuantificationSet function
getVariant | getVariant function
getVariantAnnotationSet | Gets getVariantAnnotationSet function
getVariantSet | getVariantSet function.
HGVSnames | Generate genomic variant data to HGVS nomenclature
listReferenceBases | listReferenceBases function
makeVCFFromGA4GHResponse | makeVCFFromGA4GHResponse function
makeVCFHeaderFromGA4GHResponse | makeVCFHeaderFromGA4GHResponse function
searchBiosamples | searchBiosamples function
searchCallSets | searchCallSets function
searchDatasets | searchDatasets function
searchExpressionLevels | searchExpressionLevels function
searchFeatures | searchFeatures function
searchFeatureSets | searchFeatureSets function
searchIndividuals | searchIndividuals function
searchPhenotypeAssociations | searchPhenotypeAssociations function
searchPhenotypeAssociationSets | searchPhenotypeAssociationSets function
searchReadGroupSets | searchReadGroupSets function
searchReads | searchReads function
searchReferences | searchReferences function
searchReferenceSets | searchReferenceSets function
searchRnaQuantifications | searchRnaQuantifications function
searchRnaQuantificationSets | searchRnaQuantificationSets function
searchVariantAnnotations | searchVariantAnnotations function
searchVariantAnnotationSets | searchVariantAnnotationSets function
searchVariants | searchVariants function
searchVariantsByGRanges | searchVariantsByGranges function
searchVariantSets | searchVariantSets function