# Functional Gene Networks derived from biological enrichment analyses

## Documentation for package ‘FGNet’ version 3.10.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

FGNet-package | Functional gene networks derived from biological enrichment analyses
adjMatrix | Transforms FEA output into incidence matrices.
analyzeNetwork | Analyze Functional Network
clustersDistance | Plots distances between metagroups.
fea2incidMat | Transforms FEA output into incidence matrices.
fea_david | FEA - DAVID
fea_gage | FEA - GAGE
fea_gtLinker | FEA - Gene-Term Linker
fea_gtLinker_getResults | FEA - Gene-Term Linker
FEA_tools | FGNet data
fea_topGO | FEA - topGO
FGNet | Functional gene networks derived from biological enrichment analyses
FGNet_GUI | FGNet graphical user interface
FGNet_report | FGNet report
format_david | Format DAVID output
format_results | Format FEA results from external tools.
functionalNetwork | Creates and plots the functional gene network.
getResults_david | Format DAVID output
getResults_gtLinker | FEA - Gene-Term Linker
getTerms | Get terms in the metagroups/clusters.
GOEvidenceCodes | FGNet data
groupTypes | FGNet data
intersectionNetwork | Creates and plots the functional gene network.
keywordsTerm | Select keyword term
organisms | FGNet data
plotGoAncestors | Plot GO term ancestors
plotKegg | Plot KEGG pathway
plotMetagroupsDistance | Plots distances between metagroups.
query_david | FEA - DAVID
query_gtLinker | FEA - Gene-Term Linker
readGeneTermSets | Read gene-term sets
report_david | FGNet report
report_gtLinker | FGNet report
toMatrix | Transforms FEA output into incidence matrices.