Package: DOSE
Type: Package
Title: Disease Ontology Semantic and Enrichment analysis
Version: 3.2.0
Authors@R: c(person(given = "Guangchuang", family = "Yu",
	   	    email = "guangchuangyu@gmail.com",
		    role  = c("aut", "cre")),
	     person(given = "Li-Gen", family = "Wang",
	            email = "reeganwang020@gmail.com",
		    role  = "ctb"),
	     person(given = "Vladislav", family = "Petyuk",
	     	    email = "petyuk@gmail.com",
		    role  = "ctb"),
	     person(given = "Giovanni", family = "Dall'Olio",
	            email = "giovanni.dallolio@upf.edu",
		    role = "ctb"))
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Description: This package implements five methods proposed by
    Resnik, Schlicker, Jiang, Lin and Wang respectively
    for measuring semantic similarities among DO terms and
    gene products. Enrichment analyses including hypergeometric
    model and gene set enrichment analysis are also implemented
    for discovering disease associations of high-throughput
    biological data.
Depends: R (>= 3.3.1)
Imports: AnnotationDbi, BiocParallel, DO.db, fgsea, ggplot2, GOSemSim
        (>= 2.0.0), graphics, grDevices, grid, igraph, methods, qvalue,
        reshape2, S4Vectors, scales, stats, stats4, utils
Suggests: BiocStyle, clusterProfiler, knitr, org.Hs.eg.db, testthat,
        UpSetR
VignetteBuilder: knitr
ByteCompile: true
License: Artistic-2.0
URL: https://guangchuangyu.github.io/DOSE
BugReports: https://github.com/GuangchuangYu/DOSE/issues
Packaged: 2017-04-24 23:48:27 UTC; biocbuild
biocViews: Annotation, Visualization, MultipleComparison,
        GeneSetEnrichment, Pathways, Software
RoxygenNote: 5.0.1
NeedsCompilation: no
Author: Guangchuang Yu [aut, cre],
  Li-Gen Wang [ctb],
  Vladislav Petyuk [ctb],
  Giovanni Dall'Olio [ctb]
Built: R 3.4.0; ; 2017-04-25 03:40:12 UTC; windows
