+.AdditiveUnit          Add heatmaps or row annotations to a heatmap
                        list
AdditiveUnit            Constructor method for AdditiveUnit class
AdditiveUnit-class      An internal class
ColorMapping            Constructor methods for ColorMapping class
ColorMapping-class      Class to map values to colors
ComplexHeatmap-package
                        Making complex heatmap
Heatmap                 Constructor method for Heatmap class
Heatmap-class           Class for a single heatmap
HeatmapAnnotation       Constructor method for HeatmapAnnotation class
HeatmapAnnotation-class
                        Class for heatmap annotations
HeatmapList             Constructor method for HeatmapList class
HeatmapList-class       Class for a list of heatmaps
Legend                  Making legend grobs
SingleAnnotation        Constructor method for SingleAnnotation class
SingleAnnotation-class
                        Class for a single annotation
add_heatmap             Method dispatch page for add_heatmap
add_heatmap,Heatmap-method
                        Add heatmaps or row annotations as a heatmap
                        list
add_heatmap,HeatmapAnnotation-method
                        Add row annotations or heatmaps as a heatmap
                        list
add_heatmap,HeatmapList-method
                        Add heatmaps and row annotations to the heatmap
                        list
anno_barplot            Using barplot as annotation
anno_boxplot            Using boxplot as annotation
anno_density            Using kernel density as annotation
anno_histogram          Using histogram as annotation
anno_link               Link annotation with labels
anno_oncoprint_barplot
                        Column barplot annotaiton for oncoPrint
anno_points             Using points as annotation
anno_text               Using text as annotation
annotation_legend_size,HeatmapList-method
                        Size of the annotation legend viewport
color_mapping_legend,ColorMapping-method
                        Draw legend based on color mapping
columnAnnotation        Construct column annotations
column_anno_barplot     Column annotation which is represented as
                        barplots
column_anno_boxplot     Column annotation which is represented as
                        boxplots
column_anno_density     Column annotation which is represented as
                        density plot
column_anno_histogram   Column annotation which is represented as
                        histogram
column_anno_link        Column annotation which is represented as links
column_anno_points      Column annotation which is represented as
                        points
column_anno_text        Column annotation which is represented as text
column_dend             Method dispatch page for column_dend
column_dend,Heatmap-method
                        Get column dendrograms from a heatmap
column_dend,HeatmapList-method
                        Get column dendrograms from a heatmap list
column_order            Method dispatch page for column_order
column_order,Heatmap-method
                        Get column order from a heatmap list
column_order,HeatmapList-method
                        Get column order from a heatmap list
component_height        Method dispatch page for component_height
component_height,Heatmap-method
                        Height of each heatmap component
component_height,HeatmapList-method
                        Height of each heatmap list component
component_width         Method dispatch page for component_width
component_width,Heatmap-method
                        Width of each heatmap component
component_width,HeatmapList-method
                        Width of each heatmap list component
decorate_annotation     Decorate the heatmap annotation
decorate_column_dend    Decorate heatmap dendrogram on columns
decorate_column_names   Decorate heatmap column names
decorate_column_title   Decorate heatmap column title
decorate_dend           Decorate the heatmap dendrogram
decorate_dimnames       Decorate the heatmap dimension names
decorate_heatmap_body   Decorate the heatmap body
decorate_row_dend       Decorate heatmap dendrogram on rows
decorate_row_names      Decorate heatmap row names
decorate_row_title      Decorate heatmap row title
decorate_title          Decorate the heatmap title
densityHeatmap          Use colors to represent density distribution
dist2                   Calculate pairwise distance from a matrix
draw                    Method dispatch page for draw
draw,Heatmap-method     Draw a single heatmap
draw,HeatmapAnnotation-method
                        Draw the heatmap annotations
draw,HeatmapList-method
                        Draw a list of heatmaps
draw,SingleAnnotation-method
                        Draw the single annotation
draw_annotation,Heatmap-method
                        Draw column annotations
draw_annotation_legend,HeatmapList-method
                        Draw legends for all column annotations
draw_dend,Heatmap-method
                        Draw dendrogram on row or column
draw_dimnames,Heatmap-method
                        Draw row names or column names
draw_heatmap_body,Heatmap-method
                        Draw the heatmap body
draw_heatmap_legend,HeatmapList-method
                        Draw legends for all heatmaps
draw_heatmap_list,HeatmapList-method
                        Draw the list of heatmaps
draw_title              Method dispatch page for draw_title
draw_title,Heatmap-method
                        Draw heatmap title
draw_title,HeatmapList-method
                        Draw heatmap list title
enhanced_basicplot      Enhanced version of basic barplot and boxplot
get_color_mapping_list,HeatmapAnnotation-method
                        Get a list of color mapping objects
get_color_mapping_param_list,HeatmapAnnotation-method
                        Get a list of color mapping parameters
grid.dendrogram         Draw dendrogram under grid system
heatmap_legend_size,HeatmapList-method
                        Size of the heatmap legend viewport
ht_global_opt           Global graphic options for heatmaps
is_abs_unit             Whether the unit object contains absolute unit
make_column_cluster,Heatmap-method
                        Make cluster on columns
make_layout             Method dispatch page for make_layout
make_layout,Heatmap-method
                        Make the layout of a single heatmap
make_layout,HeatmapList-method
                        Make layout for the complete plot
make_row_cluster,Heatmap-method
                        Make cluster on rows
map_to_colors,ColorMapping-method
                        Map values to colors
max_text_height         Maximum height of text
max_text_width          Maximum width of text
oncoPrint               Make oncoPrint
packLegend              Pack legends
plotDataFrame           Quickly visualize a data frame
prepare,Heatmap-method
                        Prepare the heatmap
rowAnnotation           Construct row annotations
row_anno_barplot        Row annotation which is represented as barplots
row_anno_boxplot        Row annotation which is represented as boxplots
row_anno_density        Row annotation which is represented as density
                        plot
row_anno_histogram      Row annotation which is represented as
                        histogram
row_anno_link           Column annotation which is represented as links
row_anno_points         Row annotation which is represented as points
row_anno_text           Row annotation which is represented as text
row_dend                Method dispatch page for row_dend
row_dend,Heatmap-method
                        Get row dendrograms from a heatmap
row_dend,HeatmapList-method
                        Get row dendrograms from a heatmap list
row_order               Method dispatch page for row_order
row_order,Heatmap-method
                        Get row order from a heatmap
row_order,HeatmapList-method
                        Get row order from a heatmap list
selectArea              Select an area in the heatmap
set_component_height,Heatmap-method
                        Set height of each heatmap component
show                    Method dispatch page for show
show,ColorMapping-method
                        Print ColorMapping object
show,Heatmap-method     Draw the single heatmap with default parameters
show,HeatmapAnnotation-method
                        Print the Heatmap Annotation object
show,HeatmapList-method
                        Draw a list of heatmaps with default parameters
show,SingleAnnotation-method
                        Print the SingleAnnotation object
unify_mat_list          Unify a list of matrix
