ClassifyResult          Container for Storing Classification Results
DMDselection            Selection of Differential Distributions with
                        Differences in Means or Medians and a Deviation
                        Measure
KolmogorovSmirnovSelection
                        Selection of Differential Distributions with
                        Kolmogorov-Smirnov Distance
KullbackLeiblerSelection
                        Selection of Differential Distributions with
                        Kullback Leibler Distance
PredictParams           Parameters for Classifier Prediction
ROCplot                 Plot Receiver Operating Curve Graphs for
                        Classification Results
ResubstituteParams      Parameters for Resubstitution Error Calculation
SelectParams            Parameters for Feature Selection
SelectResult            Container for Storing Feature Selection Results
TrainParams             Parameters for Classifier Training
TransformParams         Parameters for Data Transformation
bartlettSelection       Selection of Differential Variability with
                        Bartlett Statistic
calcPerformance         Add Performance Calculations to a
                        ClassifyResult object
classifyInterface       Interface for PoiClaClu Package's Classify
                        Function
distribution            Get Frequencies of Feature Selection and Sample
                        Errors
edgeRselection          Feature Selection Based on Differential
                        Expression for RNA-seq
fisherDiscriminant      Classification Using Fisher's LDA
functionOrList          Union of Functions and List of Functions
getLocationsAndScales   Calculate Location and Scale
leveneSelection         Selection of Differential Variability with
                        Levene Statistic
likelihoodRatioSelection
                        Selection of Differential Distributions with
                        Likelihood Ratio Statistic
limmaSelection          Selection of Differentially Expressed Features
medianDifferenceSelection
                        Selection of Differential Expression by
                        Comparing Differences in Medians of Groups
mixmodels               Selection of Differential Distributions with
                        Mixtures of Normals
naiveBayesKernel        Classification Using A Bayes Classifier with
                        Kernel Density Estimates
nearestShrunkenCentroidPredictInterface
                        Interface for 'pamr.predict' Function from
                        'pamr' CRAN Package
nearestShrunkenCentroidSelectionInterface
                        Interface for 'pamr.listgenes' Function from
                        'pamr' CRAN Package
nearestShrunkenCentroidTrainInterface
                        Interface for 'pamr.train' Function from 'pamr'
                        CRAN Package
pamrtrained             Trained pamr Object
performancePlot         Plot Performance Measures for Various
                        Classifications
plotFeatureClasses      Plot Density and Scatterplot for Genes By Class
previousSelection       Automated Selection of Previously Selected
                        Features
rankingPlot             Plot Pair-wise Overlap of Ranked Features
runTest                 Perform a Single Classification
runTests                Reproducibly Run Various Kinds of
                        Cross-Validation
samplesMetricMap        Plot a Grid of Sample Error Rates or Accuracies
selectionPlot           Plot Pair-wise Overlap or Selection Size
                        Distribution of Selected Features
subtractFromLocation    Subtract All Feature Measurements from Location
