# Quantitative comparison of multiple ChIP-seq datasets

## Documentation for package ‘ChIPComp’ version 1.6.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

ChIPComp-package | Detect differential binding sites for ChIP sequencing data
ChIPComp | Perform hypothesis testing to detect differential binding sites
makeConf | make configurations for experimental design written in csv sheet
makeCountSet | make differential binding sites data frame
plot.ChIPComp | plot correlation between log ChIP read counts and smoothing control counts in common binding sites.
print.ChIPComp | Print top ranked differential binding sites
seqData | A 'ChIPComp' object.