CNPBayes-package	CNPBayes
batch	batch-method
batch,DensityModel-method	batch-method
batch,MixtureModel-method	batch-method
BatchModel	BatchModel
BatchModel-class	BatchModel-class
BatchModelExample	BatchModelExample
bic	bic-method
bic,BatchModel-method	bic-method
bic,MarginalModel-method	bic-method
burnin	burnin-method
burnin,McmcParams-method	burnin-method
burnin,MixtureModel-method	burnin-method
burnin<-	burnin-method
burnin<-,McmcParams-method	burnin-method
burnin<-,MixtureModel-method	burnin-method
chains	chains-method
chains,MixtureModel-method	chains-method
chromosome	chromosome
clusters	clusters-method
clusters,DensityModel-method	clusters-method
CNPBayes	CNPBayes
collapseBatch	collapseBatch-method
collapseBatch,BatchModel-method	collapseBatch-method
collapseBatch,numeric-method	collapseBatch-method
collapseBatch,SummarizedExperiment-method	collapseBatch-method
consensusCNP	consensusCNP
DensityBatchModel-class	DensityModel-class
DensityModel	DensityModel
DensityModel-class	DensityModel-class
downsample	downsample
downSampleEachBatch	downSampleEachBatch
eta.0	eta.0-method
eta.0,Hyperparameters-method	eta.0-method
eta.0,MixtureModel-method	eta.0-method
extract	extract-methods
Hyperparameters	Hyperparameters
Hyperparameters-class	Hyperparameters-class
HyperparametersBatch	HyperparametersBatch
HyperparametersBatch-class	HyperparametersBatch-class
HyperparametersMarginal	HyperparametersMarginal
HyperparametersMarginal-class	HyperparametersMarginal-class
hyperParams	hyperParams-method
hyperParams,MixtureModel-method	hyperParams-method
hyperParams<-	hyperParams-method
hyperParams<-,MixtureModel,Hyperparameters-method	hyperParams-method
hyperParams<-,MixtureModel-method	hyperParams-method
iter	iter-method
iter,burnin,nStarts,McmcParams-method	McmcParams-class
iter,McmcParams-method	iter-method
iter,MixtureModel-method	iter-method
iter<-	iter-method
iter<-,McmcParams-method	iter-method
iter<-,MixtureModel-method	iter-method
k	k-method
k,DensityModel-method	k-method
k,Hyperparameters-method	Hyperparameters-class
k,MixtureModel-method	k-method
k<-	k-method
k<-,Hyperparameters-method	k-method
k<-,Hyperparemeters-method	k-method
k<-,MixtureModel-method	k-method
labelSwitching	labelSwitching-method
labelSwitching,MixtureModel-method	labelSwitching-method
logBayesFactor	logBayesFactor
logPrior	logPrior-method
logPrior,McmcChains-method	logPrior-method
logPrior,MixtureModel-method	logPrior-method
log_lik	log_lik-method
log_lik,McmcChains-method	log_lik-method
log_lik,MixtureModel-method	log_lik-method
m2.0	m2.0-method
m2.0,Hyperparameters-method	m2.0-method
m2.0,MixtureModel-method	m2.0-method
map	map
mapCnProbability	mapCnProbability
marginalLikelihood	marginalLikelihood-method
marginalLikelihood,BatchModel,ANY-method	marginalLikelihood-method
marginalLikelihood,BatchModel-method	marginalLikelihood-method
marginalLikelihood,list,ANY-method	marginalLikelihood-method
marginalLikelihood,list-method	marginalLikelihood-method
marginalLikelihood,MarginalModel,ANY-method	marginalLikelihood-method
marginalLikelihood,MarginalModel-method	marginalLikelihood-method
marginalLikelihood,SingleBatchPooledVar,ANY-method	marginalLikelihood-method
marginalLikelihood,SingleBatchPooledVar-method	marginalLikelihood-method
MarginalModel	MarginalModel
MarginalModel-class	MarginalModel-class
MarginalModelExample	MarginalModelExample
McmcChains-class	McmcChains-class
McmcParams	McmcParams
mcmcParams	mcmcParams-method
mcmcParams,MixtureModel-method	mcmcParams-method
McmcParams-class	McmcParams-class
mcmcParams<-	mcmcParams-method
mcmcParams<-,MixtureModel-method	mcmcParams-method
MixtureModel-class	MixtureModel-class
modes	modes-method
modes,DensityModel-method	modes-method
modes,MixtureModel-method	modes-method
modes<-	modes-method
modes<-,MixtureModel-method	modes-method
mu	mu-method
mu,BatchModel-method	mu-method
mu,MarginalModel-method	mu-method
mu,McmcChains-method	mu-method
muc	muc
muMean	muMean
names,McmcChains-method	names-methods
nStarts	nStarts-method
nStarts,McmcParams-method	nStarts-method
nStarts,MixtureModel-method	nStarts-method
nStarts<-	nStarts-method
nStarts<-,McmcParams-method	nStarts-method
nStarts<-,MixtureModel-method	nStarts-method
nu.0	nu.0-method
nu.0,McmcChains-method	nu.0-method
nu.0,MixtureModel-method	nu.0-method
oned	oned-method
oned,MixtureModel-method	oned-method
p	p
pic	pic
plot	plot
plot,BatchModel,ANY-method	plot
plot,DensityBatchModel,ANY-method	plot
plot,DensityModel,ANY-method	plot
plot,DensityModel,numeric-method	plot
plot,MarginalModel,ANY-method	plot
posteriorSimulation	posteriorSimulation-method
posteriorSimulation,MixtureModel,ANY-method	posteriorSimulation-method
posteriorSimulation,MixtureModel,integer-method	posteriorSimulation-method
posteriorSimulation,MixtureModel,numeric-method	posteriorSimulation-method
posteriorSimulation,MixtureModel-method	posteriorSimulation-method
posterior_cases	posterior_cases
probz	probz-method
probz,MixtureModel-method	probz-method
qInverseTau2	qInverseTau2
saveBatch	saveBatch
sigma	sigma
sigma2	sigma2-method
sigma2,BatchModel-method	sigma2-method
sigma2,MarginalModel-method	sigma2-method
sigma2,McmcChains-method	sigma2-method
sigma2,missing-method	sigma2-method
sigma2.0	sigma2.0-method
sigma2.0,McmcChains-method	sigma2.0-method
sigma2.0,MixtureModel-method	sigma2.0-method
sigmac	sigmac
simulateBatchData	simulateBatchData
simulateData	simulateData
tau	tau
tau2	tau2-method
tau2,BatchModel-method	tau2-method
tau2,MarginalModel-method	tau2-method
tau2,McmcChains-method	tau2-method
tauc	tauc
tauMean	tauMean
theta	theta-method
theta,BatchModel-method	theta-method
theta,MarginalModel-method	theta-method
theta,McmcChains-method	theta-method
thin	thin-method
thin,McmcParams-method	thin-method
thin,MixtureModel-method	thin-method
tracePlot	tracePlot-method
tracePlot,BatchModel-method	tracePlot-method
y	y-method
y,DensityModel-method	y-method
y,MixtureModel-method	y-method
z	z-method
z,McmcChains-method	z-method
z,MixtureModel-method	z-method
zFreq	zfreq-method
zFreq,McmcChains-method	zfreq-method
zfreq,McmcChains-method	zfreq-method
zFreq,MixtureModel-method	zfreq-method
zfreq,MixtureModel-method	zfreq-method
[,BatchModel,ANY,ANY,ANY-method	extract-methods
[,BatchModel,ANY,ANY-method	extract-methods
[,BatchModel,ANY-method	extract-methods
[,BatchModel-method	extract-methods
[,McmcChains,ANY,ANY,ANY-method	extract-methods
[,McmcChains,ANY-method	extract-methods
[,McmcChains-method	extract-methods
[,McmcParams,ANY,ANY,ANY-method	extract-methods
[,McmcParams,ANY-method	extract-methods
[,McmcParams-method	extract-methods
