BadRegionFinder-package	BadRegionFinder-package
Bad Coverage	BadRegionFinder-package
BadRegionFinder	BadRegionFinder-package
Coverage Classifier	BadRegionFinder-package
determine Coverage Quality	determineCoverageQuality
determine Quantiles	determineQuantiles
determine Regions Of Interest	determineRegionsOfInterest
determineCoverage	determineCoverage
determineCoverageQuality	determineCoverageQuality
determineQuantiles	determineQuantiles
determineRegionsOfInterest	determineRegionsOfInterest
plot Detailed	plotDetailed
plot Summary	plotSummary
plot Summary Genes	plotSummaryGenes
plotDetailed	plotDetailed
plotSummary	plotSummary
plotSummaryGenes	plotSummaryGenes
report Bad Regions Detailed	reportBadRegionsDetailed
report Bad Regions Genes	reportBadRegionsGenes
report Bad Regions Summary	reportBadRegionsSummary
reportBadRegionsDetailed	reportBadRegionsDetailed
reportBadRegionsGenes	reportBadRegionsGenes
reportBadRegionsSummary	reportBadRegionsSummary
