Package: AtlasRDF
Type: Package
Title: Gene Expression Atlas query and gene set enrichment package.
Version: 1.12.0
Date: 2015-01-26
Author: James Malone, Simon Jupp, Maryam Soleimani
Maintainer: Simon Jupp <jupp@ebi.ac.uk>
Depends: R (>= 2.10), hash, SPARQL, methods
Description: Query the Gene Expression Atlas RDF data at the European Bioinformatics Institute using genes, experimental factors (such as disease, cell type, compound treatments), pathways and proteins. Also contains a function to perform an enrichment of your gene list across Experimental Factor Ontology (EFO) using the Atlas background set. 
Note: use the R SPARQL package available at
        http://cran.r-project.org/web/packages/SPARQL/
License: Apache License 2.0
biocViews: Microarray, DataImport, GeneSetEnrichment, GeneExpression,
        DifferentialExpression, DataRepresentation
PackageStatus: Deprecated
NeedsCompilation: no
Packaged: 2017-04-25 00:20:50 UTC; biocbuild
Built: R 3.4.0; ; 2017-04-25 02:21:01 UTC; windows
