Package: HTqPCR
Type: Package
Title: Automated analysis of high-throughput qPCR data
Version: 1.26.0
Author: Heidi Dvinge, Paul Bertone
Maintainer: Heidi Dvinge <heidi@ebi.ac.uk>
Description: Analysis of Ct values from high throughput quantitative
        real-time PCR (qPCR) assays across multiple conditions or
        replicates. The input data can be from spatially-defined
        formats such ABI TaqMan Low Density Arrays or OpenArray;
        LightCycler from Roche Applied Science; the CFX plates from
        Bio-Rad Laboratories; conventional 96- or 384-well plates; or
        microfluidic devices such as the Dynamic Arrays from Fluidigm
        Corporation. HTqPCR handles data loading, quality assessment,
        normalization, visualization and parametric or non-parametric
        testing for statistical significance in Ct values between
        features (e.g. genes, microRNAs).
Reference: Heidi Dvinge and Paul Bertone (2009). HTqPCR:
        High-throughput analysis and visualization of quantitative
        real-time PCR data in R Bioinformatics.
License: Artistic-2.0
URL: http://www.ebi.ac.uk/bertone/software
LazyLoad: yes
Depends: Biobase, RColorBrewer, limma
Suggests: statmod
Imports: affy, Biobase, gplots, graphics, grDevices, limma, methods,
        RColorBrewer, stats, stats4, utils
biocViews: MicrotitrePlateAssay, DifferentialExpression,
        GeneExpression, DataImport, QualityControl, Preprocessing,
        Visualization, MultipleComparison, qPCR
NeedsCompilation: no
Packaged: 2016-05-04 02:18:58 UTC; biocbuild
Built: R 3.3.0; ; 2016-05-04 14:45:11 UTC; unix
