Package: methyAnalysis
Type: Package
Title: DNA methylation data analysis and visualization
Version: 1.11.0
Date: 2014-10-30
Depends: R (>= 2.10), grid, BiocGenerics, S4Vectors, IRanges,
        GenomeInfoDb, GenomicRanges, Biobase (>= 2.5.5), org.Hs.eg.db
Imports: lumi, methylumi, Gviz, genoset, GenomicRanges,
        VariantAnnotation, IRanges, rtracklayer, GenomicFeatures,
        annotate, Biobase (>= 2.5.5), AnnotationDbi, genefilter,
        biomaRt, methods, parallel
Suggests: FDb.InfiniumMethylation.hg19,
        TxDb.Hsapiens.UCSC.hg19.knownGene
Author: Pan Du, Richard Bourgon
Maintainer: Pan Du <dupan.mail@gmail.com>
Description: The methyAnalysis package aims for the DNA methylation data  
     analysis and visualization. A MethyGenoSet class is defined to keep the 
     chromosome location information together with the data. The package also includes
     functions of estimating the methylation levels from Methy-Seq data.
License: Artistic-2.0
LazyLoad: yes
biocViews: Microarray, DNAMethylation, Visualization
Collate: 'MethyGenoSet-class.R' 'methyAnalysis.R'
        'heatmapByChromosome.R' 'methyl-seq.R'
NeedsCompilation: no
Packaged: 2015-04-17 02:52:43 UTC; biocbuild
Built: R 3.2.0; ; 2015-04-17 13:45:17 UTC; unix
