@ARTICLE{Soneson2013,
  title    = "A comparison of methods for differential expression analysis of
              {RNA-seq} data",
  author   = "Soneson, Charlotte and Delorenzi, Mauro",
  journal  = "BMC Bioinformatics",
  volume   =  14,
  pages    = "91",
  year     =  2013
}

@Article{Stern2017,
  author   = {Stern, David B. and Breinholt, Jesse and Pedraza-Lara, Carlos and López-Mejía, Marilú and Owen, Christopher L. and Bracken-Grissom, Heather and Fetzner, James W. and Crandall, Keith A.},
  journal  = {Evolution},
  title    = {Phylogenetic evidence from freshwater crayfishes that cave adaptation is not an evolutionary dead-end},
  year     = {2017},
  issn     = {1558-5646},
  number   = {10},
  pages    = {2522--2532},
  volume   = {71},
  doi      = {10.1111/evo.13326}
}


@Article{Stern2018,
  author    = {Stern, David B. and Crandall, Keith A.},
  journal   = {Molecular Biology and Evolution},
  title     = {The Evolution of Gene Expression Underlying Vision Loss in Cave Animals},
  year      = {2018},
  number    = {8},
  pages     = {2005--2014},
  volume    = {35},
  doi       = {10.1093/molbev/msy106}
}

@Article{Bastide2022,
  author   = {Bastide, Paul and Soneson, Charlotte and Lespinet, Olivier and Gallopin, Mélina},
  title    = {Benchmark of Differential Gene Expression Analysis Methods for Inter-species RNA-Seq Data using a Phylogenetic Simulation Framework},
  year     = {2022},
  journal  = {bioRxiv preprint},
  doi      = {10.1101/2022.01.21.476612}
}
