Type: Package
Package: tidybulk
Title: Brings transcriptomics to the tidyverse
Version: 1.8.2
Authors@R: c(person("Stefano", "Mangiola", email = "mangiolastefano@gmail.com",
                  role = c("aut", "cre")),
            person("Maria", "Doyle", email = "Maria.Doyle@petermac.org",
            role = c("ctb"))
                  )
Description: This is a collection of utility functions that allow
    to perform exploration of and calculations to RNA sequencing data, in
    a modular, pipe-friendly and tidy fashion.
License: GPL-3
Depends: R (>= 4.1.0)
Imports: tibble, readr, dplyr, magrittr, tidyr, stringi, stringr,
        rlang, purrr, tidyselect, preprocessCore, stats, parallel,
        utils, lifecycle, scales, SummarizedExperiment, GenomicRanges,
        methods
Suggests: BiocStyle, testthat, vctrs, AnnotationDbi, BiocManager,
        Rsubread, e1071, edgeR, limma, org.Hs.eg.db, org.Mm.eg.db, sva,
        GGally, knitr, qpdf, covr, Seurat, KernSmooth, Rtsne,
        S4Vectors, ggplot2, widyr, clusterProfiler, msigdbr, DESeq2,
        broom, survival, boot, betareg, tidyHeatmap, pasilla, ggrepel,
        devtools, functional, survminer, tidySummarizedExperiment,
        markdown, uwot, matrixStats, igraph
VignetteBuilder: knitr
RdMacros: lifecycle
Biarch: true
biocViews: AssayDomain, Infrastructure, RNASeq, DifferentialExpression,
        GeneExpression, Normalization, Clustering, QualityControl,
        Sequencing, Transcription, Transcriptomics
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.2
LazyDataCompression: xz
URL: https://github.com/stemangiola/tidybulk
BugReports: https://github.com/stemangiola/tidybulk/issues
git_url: https://git.bioconductor.org/packages/tidybulk
git_branch: RELEASE_3_15
git_last_commit: 7c032cb
git_last_commit_date: 2022-09-27
Date/Publication: 2022-09-29
NeedsCompilation: no
Packaged: 2022-09-30 01:30:46 UTC; biocbuild
Author: Stefano Mangiola [aut, cre],
  Maria Doyle [ctb]
Maintainer: Stefano Mangiola <mangiolastefano@gmail.com>
Built: R 4.2.1; ; 2022-09-30 10:40:57 UTC; windows
