# Assessment of evidence for LOH in spatial transcriptomics pre-processed data using Bayes factor calculations

## Documentation for package ‘tLOH’ version 1.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

aggregateCHRPlot | Visualization of data output from the tLOHCalc function, aggregated per chromosome
alleleFrequencyPlot | Visualization of data output from the tLOHCalc function
cols | Removes outliers
dataframe | Removes outliers
humanGBMsampleAC | Imported dataset of a human glioblastoma spatial transcriptomics sample processed with tLOHImportData.
marginalM1Calc | Calculate marginal of Model 1
marginalM2CalcBHET | Calculation of marginal M2 het
marginalM2CalcBLOH | Marginal M2 Calculation
newValue | Removes outliers
removeOutlierFromCalc | Removes outliers
rows | Removes outliers
tLOHCalc | Assement of evidence for LOH in clusters from spatial transcriptomics data
tLOHDataImport | Import VCF for tLOHCalc