ExWAS                   Class ExWAS
ExposomeClust           Class ExposomeClust
ExposomeCorr            Class ExposomeCorr
ExposomePCA             Class ExposomePCA
ExposomeSet             Class ExposomeSet
classification          Method to get the classification of the samples
                        from an ExposomeClust.
clustering              Method to perform clustering on the samples of
                        an ExposomeSet
correlation             Creation of an ExposomeCorr from an
                        ExposomeSet.
ex_imp                  'imExposomeSet' for testing purpouses
expo                    'ExposomeSet' for testing purpouses
expo_c                  'ExposomeClust' for testing purpouses
expos                   Returns the exposures matrix of an ExposomeSet.
exposureNames           Getter to obtain the exposures's names of an
                        ExposomeSet or ExposomePCA
extract                 Raw data from 'ExWAS', 'ExposomeClust' and
                        'ExposomeCorr'.
exwas                   Testing the association between an exposure and
                        a phenotype of an ExposomeSet
familyNames             Getter to obtain the exposures's names of an
                        ExposomeSet.
highAndLow              Function to convert continuous exposures to
                        categorical exposures
ilod                    Function to impute under-LOD values from an
                        ExposomeSet
imExposomeSet           Class imExposomeSet
imputation              Function to impute missing values from an
                        ExposomeSet
imputeLOD               Function to impute values under limit of
                        detection
invExWAS                Testing the association between an exposure and
                        a phenotype of an ExposomeSet (modelling the
                        exposures as response)
loadExposome            Creation of an ExposomeSet from 'data.frames'
loadExposome_plain      Creation of an ExposomeSet from single
                        'data.frame'
loadImputed             Creation of an imExposomeSet from 'data.frames'
mExWAS                  Class mExWAS
me                      'data.frame' for testing purpouses
mexwas                  Testing the association between an exposure and
                        a phenotype of an ExposomeSet using a
                        multivariate aproach.
ndim                    Number of principal components in an
                        ExposomePCA.
normalityTest           It creates a 'data.frame' of boolean indicating
                        if the exposures follows a normal distribution
                        or not.
pca                     Creation of an ExposomePCA from an ExposomeSet.
phenotypeNames          Getter to obtain the phenotype's names of an
                        ExposomeSet or ExposomePCA.
plot3PCA                Ploting PCA in a 3D space
plotClassification      Draw the profile of the levels exposures after
                        a classification with a clustering method
plotCorrelation         It draws both circos or matrix plot for the
                        correlation in ExposomeCorr
plotEXP                 Plot correlation between exposures and PCA
plotEffect              Function to draw a plot of the pvalues stored
                        in an 'ExWAS' object
plotExwas               Function to draw a plot of the pvalues stored
                        in an 'ExWAS' object
plotFamily              It draws the profile of the exposome in an
                        ExposomeSet
plotHistogram           It draws a histogram for each exposure in an
                        ExposomeSet
plotLOD                 It draws a chart with the percentage of
                        under-LOD values in an ExposomeSet
plotMissings            It draws a chart with the percentage of missing
                        in an ExposomeSet
plotPCA                 Ploting PCA
plotPHE                 Plot association score between phentoypes and
                        PCA
plotVolcano             Function to draw a plot of the pvalues stored
                        in an 'ExWAS' object
readExposome            Creation of an ExposomeSet from files
rexposome               rexposome: Package for exposome exploration and
                        outcome data analysis
standardize             #' Summary of an ExposomeSet. #' #' Given an
                        ExposomeSet is shows a summary for its
                        exposures or #' its phenotypes. #' #' @name
                        Summary #' @rdname Summary-methods #' @aliases
                        Summary #' @param object codeExposomeSet with
                        'set' will be summarized. #' @param set Set to
                        be sumarized ('"exposures"' or '"phenotypes"').
                        #' @param select Subseting of exposures of
                        phenotypes. #' @return A basic description of
                        the exposures in the 'ExposomeSet' #' @examples
                        #' data("exposome") #' Summary(expo, set =
                        "exposures") #' @export Summary
                        setGeneric("Summary", function(object,
                        set=c("exposures", "phenotypes"), select)
                        standardGeneric("Summary") ) Standardize of an
                        ExposomeSet.
tableLOD                It creates a vector with the amount of
                        under-LOD exposures in an ExposomeSet
tableMissings           It creates a vector with the amount of missing
                        in an ExposomeSet
tef                     Function to get the Threshold for effective
                        tests (TEF)
toES                    Method to convert an imExposomeSet to an
                        ExposomeSet
trans                   Function to apply a transformation to the
                        exposures of an ExposomeSet
volcano_plot            Function to draw a Volcano Plot
