# Generated by roxygen2: do not edit by hand

S3method(as.data.frame,pareg)
S3method(coef,cv_edgenet)
S3method(coef,edgenet)
S3method(plot,pareg)
export(as_dense_sim)
export(as_enrichplot_object)
export(bernoulli)
export(beta)
export(beta_phi_lm)
export(beta_phi_var)
export(compute_term_similarities)
export(create_model_df)
export(cv_edgenet)
export(edgenet)
export(family)
export(gaussian)
export(generate_similarity_matrix)
export(jaccard)
export(overlap_coefficient)
export(pareg)
export(plot_pareg_with_args)
export(similarity_sample)
export(transform_y)
importClassesFrom(DOSE,enrichResult)
importFrom(Matrix,bdiag)
importFrom(Matrix,forceSymmetric)
importFrom(dplyr,all_of)
importFrom(dplyr,any_of)
importFrom(dplyr,arrange)
importFrom(dplyr,as_tibble)
importFrom(dplyr,desc)
importFrom(dplyr,distinct)
importFrom(dplyr,ends_with)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,inner_join)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,mutate_at)
importFrom(dplyr,n)
importFrom(dplyr,pull)
importFrom(dplyr,rename)
importFrom(dplyr,rename_at)
importFrom(dplyr,right_join)
importFrom(dplyr,rowwise)
importFrom(dplyr,select)
importFrom(dplyr,summarize)
importFrom(dplyr,tally)
importFrom(dplyr,ungroup)
importFrom(dplyr,vars)
importFrom(furrr,furrr_options)
importFrom(furrr,future_pmap_dfr)
importFrom(ggplot2,aes)
importFrom(ggplot2,coord_fixed)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,scale_color_gradient2)
importFrom(ggplot2,scale_colour_continuous)
importFrom(ggplot2,scale_fill_continuous)
importFrom(ggplot2,scale_size)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_minimal)
importFrom(ggraph,geom_edge_link)
importFrom(ggraph,geom_node_point)
importFrom(ggraph,ggraph)
importFrom(ggraph,scale_edge_alpha)
importFrom(glue,glue_collapse)
importFrom(igraph,graph_from_adjacency_matrix)
importFrom(keras,keras_model_custom)
importFrom(keras,optimizer_adam)
importFrom(keras,shape)
importFrom(magrittr,"%<>%")
importFrom(magrittr,"%>%")
importFrom(magrittr,extract2)
importFrom(matrixLaplacian,matrixLaplacian)
importFrom(methods,new)
importFrom(nloptr,bobyqa)
importFrom(progress,progress_bar)
importFrom(proxy,simil)
importFrom(purrr,pluck)
importFrom(purrr,transpose)
importFrom(reticulate,"%as%")
importFrom(rlang,.data)
importFrom(shadowtext,geom_shadowtext)
importFrom(stats,binomial)
importFrom(stats,coef)
importFrom(stats,cor)
importFrom(stats,gaussian)
importFrom(stats,runif)
importFrom(stringr,str_c)
importFrom(tensorflow,tf)
importFrom(tfprobability,tfd_bernoulli)
importFrom(tfprobability,tfd_beta)
importFrom(tfprobability,tfp)
importFrom(tibble,column_to_rownames)
importFrom(tibble,rownames_to_column)
importFrom(tibble,tibble)
importFrom(tidygraph,activate)
importFrom(tidygraph,as_tbl_graph)
importFrom(tidygraph,mutate)
importFrom(tidyr,expand_grid)
importFrom(tidyr,extract)
importFrom(tidyr,pivot_wider)
