Package: msImpute
Type: Package
Title: Imputation of label-free mass spectrometry peptides
Version: 1.6.0
Authors@R: 
    person(given = "Soroor",
           family = "Hediyeh-zadeh",
           role = c("aut", "cre"),
           email = "hediyehzadeh.s@wehi.edu.au",
           comment = c(ORCID = "0000-0001-7513-6779"))
Description: MsImpute is a package for imputation of peptide intensity in proteomics experiments.
    It additionally contains tools for MAR/MNAR diagnosis and assessment of distortions to the probability 
    distribution of the data post imputation.  The missing values are imputed by low-rank approximation of
    the underlying data matrix if they are MAR (method = "v2"), by Barycenter approach if missingness is 
    MNAR ("v2-mnar"), or by Peptide Identity Propagation (PIP).
Depends: R (>= 3.5.0)
SystemRequirements: python
Imports: softImpute, methods, stats, graphics, pdist, reticulate,
        scran, data.table, FNN, matrixStats, limma, mvtnorm, tidyr,
        dplyr
License: GPL (>=2)
Encoding: UTF-8
LazyData: true
BugReports: https://github.com/DavisLaboratory/msImpute/issues
RoxygenNote: 7.1.1
Suggests: BiocStyle, knitr, rmarkdown, ComplexHeatmap, imputeLCMD
VignetteBuilder: knitr
biocViews: MassSpectrometry, Proteomics, Software
git_url: https://git.bioconductor.org/packages/msImpute
git_branch: RELEASE_3_15
git_last_commit: bd9c63d
git_last_commit_date: 2022-04-26
Date/Publication: 2022-04-26
NeedsCompilation: no
Packaged: 2022-04-26 23:55:10 UTC; biocbuild
Author: Soroor Hediyeh-zadeh [aut, cre]
    (<https://orcid.org/0000-0001-7513-6779>)
Maintainer: Soroor Hediyeh-zadeh <hediyehzadeh.s@wehi.edu.au>
Built: R 4.2.0; ; 2022-04-27 09:46:42 UTC; windows
