235f3f5f235d3d3d1a056d2d02054afe *CITATION
c1b6f95855cdab0481bd9a56e2fe4d68 *DESCRIPTION
54ca7a321643a916c919991786b5110f *INDEX
a67b2bae97e1d6d416f773cb3f897596 *LICENSE
e82f394b6e4a2221e7042a4f679c577f *Meta/Rd.rds
9c6fc9444f1d52dca2f8e75b612d7e36 *Meta/features.rds
a6504622dfab8d528d09c611bddfd17c *Meta/hsearch.rds
c4328afa9b648ee10e5044e3213a637e *Meta/links.rds
209174beb1b4cb7fd08ca126b4deb55f *Meta/nsInfo.rds
53aba174f0493bdf597461ca141a5fe8 *Meta/package.rds
abf52a575ee110614669fea9481eab55 *Meta/vignette.rds
92a9c42e8c837bdcec7e5648d961afce *NAMESPACE
ab66dcace749116172cbd2ca24f0e47e *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/lineagespot
4b58f38985ebd46a546f0d323bdd5c3a *R/lineagespot.rdb
22c73864acf661f79cbed01ca77c60b4 *R/lineagespot.rdx
382a90a73486c6fcda87f2835b1ca72d *doc/index.html
74c923497a983a3b4c716a071ba85baf *doc/lineagespot.R
e8c040fb4a7658ecd5dab9d21dcf8ecc *doc/lineagespot.Rmd
beaee1690907b04e0bcba80a242eba12 *doc/lineagespot.html
f5e0a3774b7342f30933a6a6096b87d8 *extdata/NC_045512.2_annot.gff3
75d5f9e5aa25e8295175be3f01e5c801 *extdata/ref/AY.1.txt
a63320752bc2b7751296b4449f6e97c7 *extdata/ref/AY.2.txt
d4411d1c25b50414e66bc84fa561ad82 *extdata/ref/AY.3.1.txt
9cadcd3d11009852ef56b367f85192c2 *extdata/ref/AY.3.txt
6c30d353b0b6943653fcf8ddd4191f27 *extdata/ref/B.1.1.7+S_E484K.txt
9ea0bb2f409d7477cd4fce4f6961e883 *extdata/ref/B.1.1.7.txt
37988678fe4feeb5615208b395df7761 *extdata/ref/B.1.351.2.txt
bf8aba1c30257ea58a10556a1e990a98 *extdata/ref/B.1.351.3.txt
34a840993d5217bac537fe1d586887ad *extdata/ref/B.1.351.txt
8856c72b91d113b8ba7ae808637c44e3 *extdata/ref/B.1.617.2.txt
baba26946cb2b1592e81f3d031af4ab6 *extdata/ref/P.1.1.txt
09d79737395c6c69482e93cd753ba4ab *extdata/ref/P.1.2.txt
09d79737395c6c69482e93cd753ba4ab *extdata/ref/P.1.txt
55367e21ab319d455b1f86c15f770c6f *extdata/srep-article-code/README.md
7d232ebab2293db3c3157327af2c4bb1 *extdata/vcf-files/SampleA_freebayes_ann.vcf
e99b4f3fc50668b0f4f8ab04eb00d0e3 *extdata/vcf-files/SampleB_freebayes_ann.vcf
71c9b4573e3e3f830fd4f2ff2f0e2b46 *extdata/vcf-files/SampleC_freebayes_ann.vcf
71b6b3785f86d1adfe5dcbc69efc8bf3 *help/AnIndex
23545ea3d431261e27aad6af704e4fb0 *help/aliases.rds
f752df0c8838b32c35d6247b94b2c71f *help/lineagespot.rdb
f2ffa002208c6969d25f1d2f60bdeb8e *help/lineagespot.rdx
55e4e2e056d35bc9fba79ccee15565bc *help/paths.rds
162330306f1d746d92ee1a6f5215e995 *html/00Index.html
3845aef6126cf18c45937f292f23508c *html/R.css
9c4d7c29f3d4c520b036f6468d6f53d5 *scripts/README.md
c312f2fdbc6e364b727fbed8b26623fb *scripts/raw-data-analysis.md
