as_tibble               Convert to a tibble
bestOverlap             Find the best overlap between GRanges
chopMC                  Keep unique ranges and collapse mcols
colToRanges             Coerce a column to a GRanges object
collapseGenes           Collapse a vector of gene names
cytobands               Cytogenetic bands
distinctMC              Keep distinct ranges and mcols
dualFilter              Apply two filters to sliding windows
ex_datasets             Datasets for an example region
extraChIPs-package      extraChIPs: A package for enabling and
                        extending ChIP-Seq analysis
getProfileData          Get Profile Data surrounding specified ranges
grlToSE                 Set columns from a GRangesList as Assays in a
                        SummarizedExperiment
importPeaks             Import peaks
mapByFeature            Map Genomic Ranges to genes using defined
                        features
mergeByCol              Merge sliding windows using a specified column
partitionRanges         Partition a set of Genomic Ranges
plotAssayDensities      Plot Densities for any assay within a
                        SummarizedExperiment
plotAssayPCA            Plot PCA For any assay within a
                        SummarizedExperiment
plotAssayRle            Plot RLE for a given assay within a
                        SummarizedExperiment
plotHFGC                Plot a Genomic Region showing HiC, Features,
                        Genes and Coverage
plotOverlaps            Plot Overlaps Between List Elements
plotPie                 Draw Pie Graphs based on one or more columns
plotProfileHeatmap      Draw a coverage Profile Heatmap
propOverlap             Find the proportions of an overlapping range
reduceMC                Reduce ranges retaining mcols
setoptsMC               Perform set operations retaining mcols
stitchRanges            Stitch Ranges within a given distance
voomWeightsFromCPM      Estimate voom precision weights directly From
                        CPM values
