Package: extraChIPs
Version: 1.0.4
Title: Additional functions for working with ChIP-Seq data
Authors@R: person("Stephen", "Pederson", 
  email = "stephen.pederson.au@gmail.com", 
  role = c("aut", "cre"),
  comment = c(ORCID = "0000-0001-8197-3303")
  )
Description: This package builds on existing tools and adds some simple but
   extremely useful capabilities for working with ChIP-Seq data. The focus is 
   on detecting differential binding windows/regions. 
   One set of functions focusses on set-operations retaining mcols for GRanges
   objects, whilst another group of functions are to aid visualisation of 
   results. Coercion to tibble objects is also implemented.
License: GPL-3
Encoding: UTF-8
URL: https://github.com/steveped/extraChIPs
BugReports: https://github.com/steveped/extraChIPs/issues
Depends: BiocParallel, R (>= 4.2.0), GenomicRanges, ggplot2,
        SummarizedExperiment, tibble
Imports: BiocIO, broom, ComplexUpset, csaw, dplyr, edgeR,
        EnrichedHeatmap, forcats, GenomeInfoDb, GenomicInteractions,
        ggforce, ggrepel, ggside, glue, grDevices, grid, Gviz,
        InteractionSet, IRanges, limma, methods, RColorBrewer, rlang,
        Rsamtools, rtracklayer, S4Vectors, scales, stats, stringr,
        tidyr, tidyselect, utils, vctrs, VennDiagram
Suggests: BiocStyle, covr, knitr, plyranges, rmarkdown, testthat (>=
        3.0.0), tidyverse
biocViews: ChIPSeq, HiC, Sequencing, Coverage
BiocType: Software
VignetteBuilder: knitr
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.1
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/extraChIPs
git_branch: RELEASE_3_15
git_last_commit: 303de4a
git_last_commit_date: 2022-08-30
Date/Publication: 2022-08-30
NeedsCompilation: no
Packaged: 2022-08-30 22:25:34 UTC; biocbuild
Author: Stephen Pederson [aut, cre] (<https://orcid.org/0000-0001-8197-3303>)
Maintainer: Stephen Pederson <stephen.pederson.au@gmail.com>
Built: R 4.2.1; ; 2022-08-31 10:55:59 UTC; windows
