# volcano_report

#### Dario Righelli

#### 2020-11-24

# Volcano Plot

The volcano shows significant DEGs in red and not significant DEGs in blu.

    source("/Library/Frameworks/R.framework/Versions/4.0/Resources/library/easyreporting/script/plotFunctions.R")

     degs <- readRDS("degs.RDS")
    VolcanoPlot(degs=degs, threshold=0.05)

# Session Info

    sessionInfo()

    ## R version 4.0.3 (2020-10-10)
    ## Platform: x86_64-apple-darwin17.0 (64-bit)
    ## Running under: macOS Catalina 10.15.5
    ##
    ## Matrix products: default
    ## BLAS:   /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
    ## LAPACK: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib
    ##
    ## locale:
    ## [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
    ##
    ## attached base packages:
    ## [1] stats     graphics  grDevices utils     datasets  methods   base
    ##
    ## other attached packages:
    ## [1] easyreporting_1.3.1 ggplot2_3.3.2       shiny_1.5.0         devtools_2.3.2
    ## [5] usethis_1.6.3
    ##
    ## loaded via a namespace (and not attached):
    ##  [1] Rcpp_1.0.5        prettyunits_1.1.1 ps_1.4.0          assertthat_0.2.1
    ##  [5] rprojroot_2.0.2   digest_0.6.27     mime_0.9          R6_2.5.0
    ##  [9] evaluate_0.14     pillar_1.4.6      rlang_0.4.8       rstudioapi_0.13
    ## [13] callr_3.5.1       rmarkdown_2.5     desc_1.2.0        labeling_0.4.2
    ## [17] stringr_1.4.0     munsell_0.5.0     compiler_4.0.3    httpuv_1.5.4
    ## [21] xfun_0.19         pkgconfig_2.0.3   pkgbuild_1.1.0    htmltools_0.5.0
    ## [25] tidyselect_1.1.0  tibble_3.0.4      roxygen2_7.1.1    codetools_0.2-18
    ## [29] fansi_0.4.1       crayon_1.3.4      dplyr_1.0.2       withr_2.3.0
    ## [33] later_1.1.0.1     grid_4.0.3        jsonlite_1.7.1    xtable_1.8-4
    ## [37] gtable_0.3.0      lifecycle_0.2.0   magrittr_1.5      scales_1.1.1
    ## [41] cli_2.1.0         stringi_1.5.3     farver_2.0.3      fs_1.5.0
    ## [45] promises_1.1.1    remotes_2.2.0     testthat_3.0.0    xml2_1.3.2
    ## [49] ellipsis_0.3.1    vctrs_0.3.4       generics_0.1.0    tools_4.0.3
    ## [53] glue_1.4.2        purrr_0.3.4       processx_3.4.4    pkgload_1.1.0
    ## [57] fastmap_1.0.1     yaml_2.2.1        colorspace_2.0-0  sessioninfo_1.1.1
    ## [61] memoise_1.1.0     knitr_1.30