# cancer outlier Gene Profile Sets

## Documentation for package ‘coGPS’ version 1.40.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

coGPS-package | Cancer Outlier Gene Profile Sets
CNV_classlab_matched | Sample Data for coGPS
CNV_exprs_matched | Sample Data for coGPS
coGPS | Cancer Outlier Gene Profile Sets
Exon_classlab_matched | Sample Data for coGPS
Exon_exprs_matched | Sample Data for coGPS
Hs.gmtl.c1 | Sample Data for coGPS
Methy_classlab_matched | Sample Data for coGPS
Methy_exprs_matched | Sample Data for coGPS
PatientSpecificGeneList | Patient Specific outlier gene list
PCOPA | P-value based outlier gene detection
permCOPA | Calculate PCOPA value for permuations
plotCOPA | coGPS package internal function.
PlotTopPCOPA | Plot expression patterns of top ranked genes.