# Functions for Analyzing Cellular Barcoding Data

## Documentation for package ‘barcodetrackR’ version 1.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

barcode_binary_heatmap | Barcode Binary Heatmap
barcode_ggheatmap | barcode_ggheatmap
barcode_ggheatmap_stat | Barcode Top Clone Heatmap
barcode_stat_test | Barcode Statistical Test
bias_histogram | Bias histogram
bias_lineplot | Bias line plot
bias_ridge_plot | Bias Ridge plot
build_index_html | Build html
chord_diagram | Barcode Chord Diagram
clonal_contribution | Clonal contribution plot
clonal_count | Clonal count plot
clonal_diversity | Clonal diversity plot
cor_plot | Correlation Plot
create_SE | create_SE
dist_plot | Pairwise Distance Plot
estimate_barcode_threshold | Estimate Barcode Threshold
get_top_clones | get_top_clones (helper function)
launchApp | Launch Barcode App
mds_plot | MDS Plot
rank_abundance_plot | Rank Abundance Plot
rank_abundance_stat_test | Rank Abundance Statistical Test
scatter_plot | Scatter Plot
stat_hist | Stat histogram
subset_SE | subset_SE
threshold | Threshold
threshold_SE | Threshold SE
wu_subset | Small subset of Wu barcoding dataset