Package: bandle
Type: Package
Title: An R package to for the Bayesian analysis of differential
        subcellular localisation experiments
Version: 1.0.0
Authors@R: c(person(family = "Crook", given = "Oliver M.",
		                email = "oliver.crook@stats.ox.ac.uk",
		                comment = c(ORCID = "0000-0001-5669-8506"),
		                role = c("aut", "cre")),
		         person(family = "Breckels", given = "Lisa",
		                email = "lms79@cam.ac.uk",
		                role = c("aut")))
Description: The Bandle package enables the analysis and visualisation of
    differential localisation experiments using mass-spectrometry data.
    Experimental method supported include dynamic LOPIT-DC, hyperLOPIT, 
    Dynamic Organellar Maps, Dynamic PCP. It provides Bioconductor infrastructure
    to analyse these data.
License: Artistic-2.0
Encoding: UTF-8
Depends: R (>= 4.1), S4Vectors, Biobase, MSnbase, pRoloc
Imports: Rcpp (>= 1.0.4.6), pRolocdata, lbfgs, ggplot2, dplyr, plyr,
        knitr, methods, BiocParallel, robustbase, BiocStyle,
        ggalluvial, ggrepel, tidyr, circlize, graphics, stats, utils,
        grDevices, rlang
Suggests: coda (>= 0.19-4), testthat, interp, fields, pheatmap,
        viridis, rmarkdown, spelling
VignetteBuilder: knitr
LinkingTo: Rcpp, RcppArmadillo, BH
Roxygen: list(markdown=TRUE)
RoxygenNote: 7.1.2
biocViews: Bayesian, Classification, Clustering, ImmunoOncology,
        QualityControl,DataImport, Proteomics, MassSpectrometry
BugReports: https://github.com/ococrook/bandle/issues
URL: http://github.com/ococrook/bandle
Language: en-US
git_url: https://git.bioconductor.org/packages/bandle
git_branch: RELEASE_3_15
git_last_commit: a10b7c7
git_last_commit_date: 2022-04-26
Date/Publication: 2022-04-26
NeedsCompilation: yes
Packaged: 2022-04-26 21:32:17 UTC; biocbuild
Author: Oliver M. Crook [aut, cre] (<https://orcid.org/0000-0001-5669-8506>),
  Lisa Breckels [aut]
Maintainer: Oliver M. Crook <oliver.crook@stats.ox.ac.uk>
Built: R 4.2.0; x86_64-w64-mingw32; 2022-04-27 09:10:22 UTC; windows
ExperimentalWindowsRuntime: ucrt
Archs: x64
