AtenaParam-class        Atena parameter class
ERVmapParam-class       ERVmap parameter class
TEtranscriptsParam-class
                        TEtranscripts parameter class
TelescopeParam-class    Telescope parameter class
annotaTEs               Get RepeatMasker UCSC annotations
atena-package           atena: analysis of transposable elements in R
                        and Bioconductor
ovUnion                 Pre-defined overlapping mode functions
qtex,ERVmapParam-method
                        Quantify transposable element expression
rmskbasicparser         Parser of RepeatMasker annotations
rmskidentity            Identity function for parsefun
