# Generated by roxygen2: do not edit by hand

export("drugInfo<-")
export("drugNames<-")
export(.convertTsetMolecularProfilesToSE)
export(ToxicoSet)
export(ToxicoSig)
export(availableTSets)
export(checkTSetStructure)
export(computeAUC)
export(computeIC50)
export(computeICn)
export(computeLimmaDiffExpr)
export(downloadTSet)
export(drugGeneResponseCurve)
export(drugInfo)
export(drugNames)
export(drugPerturbationSig)
export(drugTimeResponseCurve)
export(geneDrugPerturbation)
export(logLogisticRegression)
export(showSigAnnot)
export(subsetTo)
export(summarizeMolecularProfiles)
export(summarizeSensitivityProfiles)
exportMethods("[")
exportMethods("annotation<-")
exportMethods("curation<-")
exportMethods("datasetType<-")
exportMethods("dateCreated<-")
exportMethods("fNames<-")
exportMethods("featureInfo<-")
exportMethods("mDataNames<-")
exportMethods("molecularProfiles<-")
exportMethods("molecularProfilesSlot<-")
exportMethods("name<-")
exportMethods("pertNumber<-")
exportMethods("phenoInfo<-")
exportMethods("sampleInfo<-")
exportMethods("sampleNames<-")
exportMethods("sensNumber<-")
exportMethods("sensitivityInfo<-")
exportMethods("sensitivityProfiles<-")
exportMethods("sensitivityRaw<-")
exportMethods("sensitivitySlot<-")
exportMethods("treatmentInfo<-")
exportMethods("treatmentNames<-")
exportMethods(annotation)
exportMethods(computeLimmaDiffExpr)
exportMethods(curation)
exportMethods(datasetType)
exportMethods(dateCreated)
exportMethods(dim)
exportMethods(fNames)
exportMethods(featureInfo)
exportMethods(mDataNames)
exportMethods(molecularProfiles)
exportMethods(molecularProfilesSlot)
exportMethods(name)
exportMethods(pertNumber)
exportMethods(phenoInfo)
exportMethods(sampleInfo)
exportMethods(sampleNames)
exportMethods(sensNumber)
exportMethods(sensitivityInfo)
exportMethods(sensitivityMeasures)
exportMethods(sensitivityProfiles)
exportMethods(sensitivityRaw)
exportMethods(sensitivitySlot)
exportMethods(show)
exportMethods(treatmentInfo)
exportMethods(treatmentNames)
exportMethods(updateObject)
import(Biobase)
import(data.table)
import(ggplot2)
import(jsonlite)
import(limma)
import(methods)
importClassesFrom(CoreGx,CoreSet)
importClassesFrom(S4Vectors,DataFrame)
importClassesFrom(S4Vectors,SimpleList)
importClassesFrom(SummarizedExperiment,Assays)
importClassesFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(Biobase,"assayDataElement<-")
importFrom(Biobase,"fData<-")
importFrom(Biobase,AnnotatedDataFrame)
importFrom(Biobase,ExpressionSet)
importFrom(Biobase,annotation)
importFrom(Biobase,assayData)
importFrom(Biobase,assayDataElement)
importFrom(Biobase,assayDataElementNames)
importFrom(Biobase,experimentData)
importFrom(Biobase,exprs)
importFrom(Biobase,fData)
importFrom(Biobase,pData)
importFrom(Biobase,protocolData)
importFrom(BiocParallel,bplapply)
importFrom(BiocParallel,bpvec)
importFrom(CoreGx,"cellInfo<-")
importFrom(CoreGx,.error)
importFrom(CoreGx,.message)
importFrom(CoreGx,.unionList)
importFrom(CoreGx,.warning)
importFrom(CoreGx,CoreSet)
importFrom(CoreGx,cellInfo)
importFrom(CoreGx,updateSampleId)
importFrom(CoreGx,updateTreatmentId)
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,SimpleList)
importFrom(S4Vectors,metadata)
importFrom(SummarizedExperiment,"assayNames<-")
importFrom(SummarizedExperiment,"colData<-")
importFrom(SummarizedExperiment,"rowData<-")
importFrom(SummarizedExperiment,Assays)
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,assayNames)
importFrom(SummarizedExperiment,assays)
importFrom(SummarizedExperiment,coerce)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(assertthat,are_equal)
importFrom(caTools,trapz)
importFrom(data.table,":=")
importFrom(data.table,`:=`)
importFrom(data.table,as.data.table)
importFrom(data.table,data.table)
importFrom(data.table,melt.data.table)
importFrom(data.table,merge.data.table)
importFrom(data.table,tstrsplit)
importFrom(downloader,download)
importFrom(dplyr,"%>%")
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,mutate)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(graphics,hist)
importFrom(magrittr,"%<>%")
importFrom(reshape2,acast)
importFrom(scales,rescale)
importFrom(stats,anova)
importFrom(stats,complete.cases)
importFrom(stats,dcauchy)
importFrom(stats,dnorm)
importFrom(stats,formula)
importFrom(stats,glm)
importFrom(stats,integrate)
importFrom(stats,lm)
importFrom(stats,median)
importFrom(stats,model.frame)
importFrom(stats,model.matrix)
importFrom(stats,na.omit)
importFrom(stats,optim)
importFrom(stats,p.adjust)
importFrom(stats,pcauchy)
importFrom(stats,pf)
importFrom(stats,pnorm)
importFrom(stats,rcauchy)
importFrom(stats,rnorm)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(stats,var)
importFrom(tibble,as_tibble)
importFrom(tidyr,gather)
importFrom(utils,read.table)
importFrom(utils,sessionInfo)
importFrom(utils,setTxtProgressBar)
importFrom(utils,txtProgressBar)
importFrom(utils,write.table)
importMethodsFrom(BiocGenerics,"annotation<-")
importMethodsFrom(BiocGenerics,annotation)
importMethodsFrom(CoreGx,"annotation<-")
importMethodsFrom(CoreGx,"curation<-")
importMethodsFrom(CoreGx,"datasetType<-")
importMethodsFrom(CoreGx,"dateCreated<-")
importMethodsFrom(CoreGx,"fNames<-")
importMethodsFrom(CoreGx,"featureInfo<-")
importMethodsFrom(CoreGx,"mDataNames<-")
importMethodsFrom(CoreGx,"molecularProfiles<-")
importMethodsFrom(CoreGx,"molecularProfilesSlot<-")
importMethodsFrom(CoreGx,"name<-")
importMethodsFrom(CoreGx,"pertNumber<-")
importMethodsFrom(CoreGx,"phenoInfo<-")
importMethodsFrom(CoreGx,"sampleInfo<-")
importMethodsFrom(CoreGx,"sampleNames<-")
importMethodsFrom(CoreGx,"sensNumber<-")
importMethodsFrom(CoreGx,"sensitivityInfo<-")
importMethodsFrom(CoreGx,"sensitivityProfiles<-")
importMethodsFrom(CoreGx,"sensitivityRaw<-")
importMethodsFrom(CoreGx,"sensitivitySlot<-")
importMethodsFrom(CoreGx,"treatmentInfo<-")
importMethodsFrom(CoreGx,"treatmentNames<-")
importMethodsFrom(CoreGx,annotation)
importMethodsFrom(CoreGx,curation)
importMethodsFrom(CoreGx,datasetType)
importMethodsFrom(CoreGx,dateCreated)
importMethodsFrom(CoreGx,fNames)
importMethodsFrom(CoreGx,featureInfo)
importMethodsFrom(CoreGx,mDataNames)
importMethodsFrom(CoreGx,molecularProfiles)
importMethodsFrom(CoreGx,molecularProfilesSlot)
importMethodsFrom(CoreGx,name)
importMethodsFrom(CoreGx,pertNumber)
importMethodsFrom(CoreGx,phenoInfo)
importMethodsFrom(CoreGx,sampleInfo)
importMethodsFrom(CoreGx,sampleNames)
importMethodsFrom(CoreGx,sensNumber)
importMethodsFrom(CoreGx,sensitivityInfo)
importMethodsFrom(CoreGx,sensitivityMeasures)
importMethodsFrom(CoreGx,sensitivityProfiles)
importMethodsFrom(CoreGx,sensitivityRaw)
importMethodsFrom(CoreGx,sensitivitySlot)
importMethodsFrom(CoreGx,show)
importMethodsFrom(CoreGx,treatmentInfo)
importMethodsFrom(CoreGx,treatmentNames)
importMethodsFrom(CoreGx,updateObject)
