bcb46671f9de67f4c98c54cd2fb7b0a6 *CITATION
6e19e6ee77060a512c80d7201fb04848 *DESCRIPTION
d7bef1091553b8d404d3cabd025ccbfc *INDEX
d56ec31f60784327f23add5c72fbc371 *Meta/Rd.rds
795ef1933dd6e5a92764af4150ef47ba *Meta/features.rds
b965e49bdf3adae190961f42a0c11d66 *Meta/hsearch.rds
ce1a820daff33c598795dfe5d7c6cb32 *Meta/links.rds
2a70b5d0b277bf008360cdffccee2d19 *Meta/nsInfo.rds
a885a35bb0f49602f2163b283bc2f1f4 *Meta/package.rds
5273e35b3d6189a7392a612413106e13 *Meta/vignette.rds
be218ab5f8593f82380357fb87629d5c *NAMESPACE
b007b46222fb43891323e555c865e3f3 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/GenomicAlignments
531e2b65672e9b56be2e45051a1fcaf2 *R/GenomicAlignments.rdb
30fdcfa8672b60d289cef53d6f63338d *R/GenomicAlignments.rdx
87c1aee70a53b2832ae0a7b1d1ea22d0 *doc/GenomicAlignmentsIntroduction.R
6e39e7a38e67414501fb32634a4052aa *doc/GenomicAlignmentsIntroduction.Rnw
ac6ab65ad002123388bd37324a9be253 *doc/GenomicAlignmentsIntroduction.pdf
0d307bd84b97e9958f7d683066cc6792 *doc/OverlapEncodings.R
68888481e2bba183e3408e111907d416 *doc/OverlapEncodings.Rnw
9bf5dec140da48173022e541cba24baf *doc/OverlapEncodings.pdf
fefe6ab83378e1021ae62b51ca854ef2 *doc/WorkingWithAlignedNucleotides.R
7ffa5eec2eb7b955ca22579bb869bff8 *doc/WorkingWithAlignedNucleotides.Rnw
927d3cf8347a0a79f359fd9cf2a2c596 *doc/WorkingWithAlignedNucleotides.pdf
9d115c15a28049cb12fc89f67565a0c1 *doc/index.html
1c40ffe1d41ef7d3f3821184383ae85e *doc/summarizeOverlaps.R
5398e425480c1f764c0dce679bd32525 *doc/summarizeOverlaps.Rnw
8695553ae76f59bd3eb0d2f86a4bc3c4 *doc/summarizeOverlaps.pdf
1c380f8159fda8fad5d0d4902ae9ea23 *extdata/sm_treated1.bam
af83f784077fcced98e3603bb7ad7a4e *extdata/sm_untreated1.bam
9b75e3be5ca1e1838e23e9afc5de094b *help/AnIndex
da16ce785abcb93ce3c6eb2b3d3a6b01 *help/GenomicAlignments.rdb
29eb998c44640c1a195bb030c531fb76 *help/GenomicAlignments.rdx
5c5a681c8b4a9214b6bfb0f04b3802f7 *help/aliases.rds
8f12eedb357c0a11a71200d052fd0658 *help/paths.rds
6fc1d7f4849cfb0e9fadf8eeac6c21d6 *html/00Index.html
3845aef6126cf18c45937f292f23508c *html/R.css
ecb07d6b0bca4cbb9aa9359d451e4aa2 *libs/x64/GenomicAlignments.dll
22193c72fc07c32f876acee489f2ce96 *unitTests/test_GAlignments-class.R
b02dc164314a2514a39276e822352122 *unitTests/test_GAlignmentsList-class.R
8ebc949e316f84ed21c18fdf971de87f *unitTests/test_cigar-utils.R
1eec99e806cfe128483fd803bcfdd43f *unitTests/test_coordinate-mapping-methods.R
229bfd98328fafca3f1ad0a5e5e1d307 *unitTests/test_findSpliceOverlaps-methods.R
03c20128d1742334efd9c564122e1e4b *unitTests/test_intra-range-methods.R
a369c93b31e2e090aba36dcab66fa759 *unitTests/test_readGAlignmentPairs.R
d6c4737a308c9831ecaff1d0bbd842d5 *unitTests/test_readGAlignments.R
8e3c3cb75da36b4ab3daa58c6b46bef7 *unitTests/test_readGAlignmentsList.R
3ee2246e46dee0999386dd9538c4a5cc *unitTests/test_summarizeOverlaps-methods.R
