# Generated by roxygen2: do not edit by hand

export(ClassifyResult)
export(CrossValParams)
export(DLDApredictInterface)
export(DLDAtrainInterface)
export(DMDranking)
export(FeatureSetCollection)
export(KolmogorovSmirnovRanking)
export(KullbackLeiblerRanking)
export(ModellingParams)
export(NSCfeatures)
export(NSCpredictInterface)
export(NSCtrainInterface)
export(PredictParams)
export(ROCplot)
export(SVMpredictInterface)
export(SVMtrainInterface)
export(SelectParams)
export(TrainParams)
export(TransformParams)
export(actualOutcomes)
export(allFeatureNames)
export(bartlettRanking)
export(calcCVperformance)
export(calcExternalPerformance)
export(chosenFeatureNames)
export(classifyInterface)
export(coxnetPredictInterface)
export(coxnetTrainInterface)
export(coxphPredictInterface)
export(coxphRanking)
export(coxphTrainInterface)
export(crossValidate)
export(differentMeansRanking)
export(distribution)
export(edgeRranking)
export(edgesToHubNetworks)
export(elasticNetFeatures)
export(elasticNetGLMpredictInterface)
export(elasticNetGLMtrainInterface)
export(featureSetSummary)
export(fisherDiscriminant)
export(forestFeatures)
export(generateCrossValParams)
export(generateModellingParams)
export(getLocationsAndScales)
export(interactorDifferences)
export(kNNinterface)
export(kTSPclassifier)
export(leveneRanking)
export(likelihoodRatioRanking)
export(limmaRanking)
export(mixModelsPredict)
export(mixModelsTrain)
export(models)
export(naiveBayesKernel)
export(pairsDifferencesRanking)
export(performance)
export(performancePlot)
export(plotFeatureClasses)
export(predictions)
export(previousSelection)
export(previousTrained)
export(randomForestPredictInterface)
export(randomForestTrainInterface)
export(rankingPlot)
export(runTest)
export(runTests)
export(sampleNames)
export(samplesMetricMap)
export(selectionPlot)
export(subtractFromLocation)
export(totalPredictions)
export(tunedParameters)
exportClasses(ClassifyResult)
exportClasses(CrossValParams)
exportClasses(FeatureSetCollection)
exportClasses(ModellingParams)
exportClasses(PredictParams)
exportClasses(SelectParams)
exportClasses(TrainParams)
exportClasses(TransformParams)
exportMethods("[")
exportMethods("[[")
exportMethods(ClassifyResult)
exportMethods(DLDApredictInterface)
exportMethods(DLDAtrainInterface)
exportMethods(DMDranking)
exportMethods(FeatureSetCollection)
exportMethods(KolmogorovSmirnovRanking)
exportMethods(KullbackLeiblerRanking)
exportMethods(NSCfeatures)
exportMethods(NSCpredictInterface)
exportMethods(NSCtrainInterface)
exportMethods(PredictParams)
exportMethods(ROCplot)
exportMethods(SVMpredictInterface)
exportMethods(SVMtrainInterface)
exportMethods(SelectParams)
exportMethods(TrainParams)
exportMethods(TransformParams)
exportMethods(actualOutcomes)
exportMethods(allFeatureNames)
exportMethods(bartlettRanking)
exportMethods(calcCVperformance)
exportMethods(calcExternalPerformance)
exportMethods(chosenFeatureNames)
exportMethods(classifyInterface)
exportMethods(coxnetPredictInterface)
exportMethods(coxnetTrainInterface)
exportMethods(coxphPredictInterface)
exportMethods(coxphRanking)
exportMethods(coxphTrainInterface)
exportMethods(crossValidate)
exportMethods(differentMeansRanking)
exportMethods(distribution)
exportMethods(edgeRranking)
exportMethods(elasticNetFeatures)
exportMethods(elasticNetGLMpredictInterface)
exportMethods(elasticNetGLMtrainInterface)
exportMethods(featureSetSummary)
exportMethods(fisherDiscriminant)
exportMethods(forestFeatures)
exportMethods(getLocationsAndScales)
exportMethods(interactorDifferences)
exportMethods(kNNinterface)
exportMethods(kTSPclassifier)
exportMethods(length)
exportMethods(leveneRanking)
exportMethods(likelihoodRatioRanking)
exportMethods(limmaRanking)
exportMethods(mixModelsPredict)
exportMethods(mixModelsTrain)
exportMethods(models)
exportMethods(naiveBayesKernel)
exportMethods(pairsDifferencesRanking)
exportMethods(performance)
exportMethods(performancePlot)
exportMethods(plotFeatureClasses)
exportMethods(predict)
exportMethods(predictions)
exportMethods(previousSelection)
exportMethods(previousTrained)
exportMethods(randomForestPredictInterface)
exportMethods(randomForestTrainInterface)
exportMethods(rankingPlot)
exportMethods(runTest)
exportMethods(runTests)
exportMethods(sampleNames)
exportMethods(samplesMetricMap)
exportMethods(selectionPlot)
exportMethods(show)
exportMethods(subtractFromLocation)
exportMethods(totalPredictions)
exportMethods(tunedParameters)
import(BiocParallel)
import(grid)
import(methods)
import(stats)
import(utils)
importFrom(MultiAssayExperiment,colData)
importFrom(MultiAssayExperiment,wideFormat)
importFrom(S4Vectors,as.data.frame)
importFrom(S4Vectors,do.call)
importFrom(S4Vectors,mcols)
importFrom(dplyr,mutate)
importFrom(dplyr,n)
importFrom(randomForest,importance)
importFrom(randomForest,varUsed)
importFrom(rlang,sym)
importFrom(survival,Surv)
importFrom(survival,concordance)
importFrom(survival,coxph)
importFrom(tidyr,gather)
