# Generated by roxygen2: do not edit by hand

export(add.row.to.meta)
export(automatic.COTAN.object.creation)
export(clean)
export(cotan_analysis)
export(drop.genes.cells)
export(est.min.parameters)
export(extract.coex)
export(get.GDI)
export(get.a)
export(get.cell.number)
export(get.cell.size)
export(get.coex)
export(get.constitutive.genes)
export(get.expected.ct)
export(get.gene.coexpression.space)
export(get.genes)
export(get.lambda)
export(get.metadata)
export(get.normdata)
export(get.nu)
export(get.observed.ct)
export(get.pval)
export(get.rawdata)
export(get.subset)
export(initRaw)
export(mat2vec_rfast)
export(plot_GDI)
export(plot_general.heatmap)
export(plot_heatmap)
export(vec2mat_rfast)
exportClasses(scCOTAN)
import(ComplexHeatmap)
import(basilisk)
import(dplyr)
import(ggplot2)
import(ggrepel)
import(grDevices)
import(methods)
import(reticulate)
import(scales)
import(tidyr)
importFrom(Matrix,colMeans)
importFrom(Matrix,colSums)
importFrom(Matrix,forceSymmetric)
importFrom(Matrix,rowMeans)
importFrom(Matrix,rowSums)
importFrom(Rfast,lower_tri.assign)
importFrom(Rfast,transpose)
importFrom(Rfast,upper_tri.assign)
importFrom(circlize,colorRamp2)
importFrom(grid,gpar)
importFrom(methods,new)
importFrom(parallel,mclapply)
importFrom(rlang,is_empty)
importFrom(stats,cutree)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,nlminb)
importFrom(stats,pchisq)
importFrom(stats,quantile)
importFrom(tibble,rownames_to_column)
importFrom(utils,head)
importFrom(utils,write.csv)
