Package: CNVMetrics
Type: Package
Version: 1.0.0
Date: 2021-11-23
Title: Copy Number Variant Metrics
Description: The CNVMetrics package calculates similarity metrics to 
    facilitate copy number variant comparison among samples and/or methods. 
    Similarity metrics can be employed to compare CNV profiles of genetically 
    unrelated samples as well as those with a common genetic background. 
    Some metrics are based on the shared amplified/deleted regions while other 
    metrics rely on the level of amplification/deletion. 
    The data type used as input is a plain text file containing the genomic 
    position of the copy number variations, as well as the status and/or 
    the log2 ratio values.
    Finally, a visualization tool is provided to explore resulting metrics.
Authors@R: c(person("Astrid", "Deschênes", email = "adeschen@hotmail.com",
    role = c("aut", "cre"),
    comment = c(ORCID = "0000-0001-7846-6749")), 
    person("Pascal", "Belleau", email = "pascal_belleau@hotmail.com",
    role = c("aut"),
    comment = c(ORCID = "0000-0002-0802-1071")),
    person(given="David A.", family="Tuveson",  
    email="dtuveson@cshl.edu", role = c("aut")),
    person("Alexander", "Krasnitz", email = "krasnitz@cshl.edu",
    role = c("aut")))
Encoding: UTF-8
License: Artistic-2.0
Depends: R (>= 4.1)
Imports: GenomicRanges, IRanges, S4Vectors, BiocParallel, methods,
        magrittr, stats, pheatmap, gridExtra, grDevices
Suggests: BiocStyle, knitr, rmarkdown, testthat
biocViews: BiologicalQuestion, Software, CopyNumberVariation
VignetteBuilder: knitr
URL: https://github.com/krasnitzlab/CNVMetrics,
        https://krasnitzlab.github.io/CNVMetrics/
BugReports: https://github.com/krasnitzlab/CNVMetrics/issues
RoxygenNote: 7.1.1
git_url: https://git.bioconductor.org/packages/CNVMetrics
git_branch: RELEASE_3_15
git_last_commit: a8a3020
git_last_commit_date: 2022-04-26
Date/Publication: 2022-04-26
NeedsCompilation: no
Packaged: 2022-04-26 22:02:07 UTC; biocbuild
Author: Astrid Deschênes [aut, cre] (<https://orcid.org/0000-0001-7846-6749>),
  Pascal Belleau [aut] (<https://orcid.org/0000-0002-0802-1071>),
  David A. Tuveson [aut],
  Alexander Krasnitz [aut]
Maintainer: Astrid Deschênes <adeschen@hotmail.com>
Built: R 4.2.0; ; 2022-04-27 09:19:22 UTC; windows
