wateRmelon-package	wateRmelon-package
.getManifestString	dot-getManifestString
adaptRefQuantiles	adaptRefQuantiles
adjustedDasen	adjustedDasen
adjustedDasen,MethylSet-method	adjustedDasen
adjustedDasen,MethyLumiSet-method	adjustedDasen
adjustedDasen,RGChannelSet-method	adjustedDasen
adjustedFunnorm	adjustedFunnorm
agep	agep
agep,MethylSet-method	agep
agep,MethyLumiSet-method	agep
agep,RGChannelSet-method	agep
age_coefficients	agep
anSNP	wm_internal
anti.trafo	wm_internal
aoget	wm_internal
as.methylumi	as.methylumi-methods
as.methylumi,ANY-method	as.methylumi-methods
as.methylumi,MethylSet-method	as.methylumi-methods
as.methylumi,MethyLumiSet-method	as.methylumi-methods
as.methylumi-methods	as.methylumi-methods
auc_probability	wm_internal
beadc	beadc
beadcount	beadcount
Beta2M	Beta2M
betaqn	dasen
betaqn,exprmethy450-method	dasen-exprmethy450
betaqn,MethylSet-method	dasen-MethySet
betaqn,MethyLumiSet-method	dasen-MethyLumiSet
betaqn,RGChannelSet-method	dasen-MethySet
bfp	wm_internal
bgIntensitySwan.methylumi	adaptRefQuantiles
BMIQ	BMIQ
BMIQ,ANY-method	BMIQ
BMIQ,MethylSet-method	BMIQ
BMIQ,MethyLumiSet-method	BMIQ
BMIQ-methods	BMIQ
bscon	bscon
bscon,MethyLumiSet-method	bscon
bscon,RGChannelSet-method	bscon
bscon_methy	wm_internal
bscon_minfi	wm_internal
CheckBMIQ	BMIQ
coef	agep
colnames,MethyLumiSet-method	colnames-methods
colnames-methods	colnames-methods
columnMatrix	wm_internal
combo	combo
concatenateMatrices	adaptRefQuantiles
coRankedMatrices	adaptRefQuantiles
correctI	Beta2M
correctII	Beta2M
danen	dasen
danen,MethylSet-method	dasen-MethySet
danen,MethyLumiSet-method	dasen-MethyLumiSet
danen,RGChannelSet-method	dasen-MethySet
danes	dasen
danes,MethylSet-method	dasen-MethySet
danes,MethyLumiSet-method	dasen-MethyLumiSet
danes,RGChannelSet-method	dasen-MethySet
danet	dasen
danet,MethylSet-method	dasen-MethySet
danet,MethyLumiSet-method	dasen-MethyLumiSet
danet,RGChannelSet-method	dasen-MethySet
dasen	dasen
dasen,MethylSet-method	dasen-MethySet
dasen,MethyLumiSet-method	dasen-MethyLumiSet
dasen,RGChannelSet-method	dasen-MethySet
dataDetectPval2NA	adaptRefQuantiles
DataToNChannelSet2	wm_internal
daten1	dasen
daten1,MethylSet-method	dasen-MethySet
daten1,MethyLumiSet-method	dasen-MethyLumiSet
daten1,RGChannelSet-method	dasen-MethySet
daten2	dasen
daten2,MethylSet-method	dasen-MethySet
daten2,MethyLumiSet-method	dasen-MethyLumiSet
daten2,RGChannelSet-method	dasen-MethySet
db1	db1
designIItoMandU2	wm_internal
designItoMandU2	wm_internal
detectionPval.filter	adaptRefQuantiles
dfort	wm_internal
dfs2	db1
dfsfit	db1
dmrse	dmrse
dmrse,exprmethy450-method	dmrse-methods
dmrse,MethylSet-method	dmrse-methods
dmrse,MethyLumiSet-method	dmrse-methods
dmrse,RGChannelSet-method	dmrse-methods
dmrse-methods	dmrse-methods
dmrse_col	dmrse
dmrse_col,exprmethy450-method	dmrse-methods
dmrse_col,MethylSet-method	dmrse-methods
dmrse_col,MethyLumiSet-method	dmrse-methods
dmrse_col,RGChannelSet-method	dmrse-methods
dmrse_col-methods	dmrse-methods
dmrse_row	dmrse
dmrse_row,exprmethy450-method	dmrse-methods
dmrse_row,MethylSet-method	dmrse-methods
dmrse_row,MethyLumiSet-method	dmrse-methods
dmrse_row,RGChannelSet-method	dmrse-methods
dmrse_row-methods	dmrse-methods
epic.controls	readEPIC
estimateCellCounts.wateRmelon	estimateCellCounts.wmln
estimateCellCounts.wateRmelon,MethylSet-method	estimateCellCounts.wmln
estimateCellCounts.wateRmelon,MethyLumiSet-method	estimateCellCounts.wmln
estimateCellCounts.wateRmelon,RGChannelSet-method	estimateCellCounts.wmln
estimateCellCounts.wmln	estimateCellCounts.wmln
estimateSex	estimateSex
extractAssayDataFromList2	wm_internal
filterXY	adaptRefQuantiles
findAnnotationProbes	adaptRefQuantiles
fot	got
fuks	dasen
fuks,exprmethy450-method	dasen-exprmethy450
fuks,MethylSet-method	dasen-MethySet
fuks,MethyLumiSet-method	dasen-MethyLumiSet
fuks,RGChannelSet-method	dasen-MethySet
gcoms	genkme
gcose	genkme
genall	wm_internal
generateManifest	wm_internal
genki	genki
genki,exprmethy450-method	genki-methods
genki,MethylSet-method	genki-methods
genki,MethyLumiSet-method	genki-methods
genki,RGChannelSet-method	genki-methods
genki-methods	genki-methods
genkme	genkme
genkus	genkme
genme	wm_internal
genus	wm_internal
getColumns	as.methylumi-methods
getControlProbes2	wm_internal
getMethylationBeadMappers2	wm_internal
getMethylumiBeta	adaptRefQuantiles
getQuantiles	adaptRefQuantiles
getSamples	adaptRefQuantiles
getsnp	genkme
goodSNP	wm_internal
got	got
hannumCoef	agep
IDATsToMatrices2	wm_internal
IDATtoMatrix2	wm_internal
iDMR	iDMR
iqrFun	wm_internal
loadMethylumi2	adaptRefQuantiles
lumiMethyR2	adaptRefQuantiles
M2Beta	Beta2M
melon	melon
mergeProbeDesigns2	wm_internal
methylumIDATepic	wm_internal
metrics	metrics
mvFun	wm_internal
nanes	dasen
nanes,MethylSet-method	dasen-MethySet
nanes,MethyLumiSet-method	dasen-MethyLumiSet
nanes,RGChannelSet-method	dasen-MethySet
nanet	dasen
nanet,MethylSet-method	dasen-MethySet
nanet,MethyLumiSet-method	dasen-MethyLumiSet
nanet,RGChannelSet-method	dasen-MethySet
nasen	dasen
nasen,MethylSet-method	dasen-MethySet
nasen,MethyLumiSet-method	dasen-MethyLumiSet
nasen,RGChannelSet-method	dasen-MethySet
naten	dasen
naten,MethylSet-method	dasen-MethySet
naten,MethyLumiSet-method	dasen-MethyLumiSet
naten,RGChannelSet-method	dasen-MethySet
nbBeadsFilter	adaptRefQuantiles
NChannelSetToMethyLumiSet2	wm_internal
normalize.quantiles2	adaptRefQuantiles
normalizeIlluminaMethylation	adaptRefQuantiles
outlyx	outlyx
outlyx,MethylSet-method	outlyx-methods
outlyx,MethyLumiSet-method	outlyx-methods
outlyx,RGChannelSet-method	outlyx-methods
oxyscale	wm_internal
pcouted	wm_internal
pfilter	pfilter
pfilter,MethyLumiSet-method	pfilter
pfilter,RGChannelSetExtended-method	pfilter
pfilter-methods	pfilter
pipelineIlluminaMethylation.batch	adaptRefQuantiles
plot_predicted_sex	wm_internal
pop	dot-getManifestString
preprocessIlluminaMethylation	adaptRefQuantiles
pwod	pwod
pwod,MethylSet-method	pwod-methods
pwod,MethyLumiSet-method	pwod-methods
pwod,RGChannelSet-method	pwod-methods
p_dfsfit	wm_internal
qual	qual
readEPIC	readEPIC
referenceQuantiles	adaptRefQuantiles
robustQuantileNorm_Illumina450K	adaptRefQuantiles
robustQuantileNorm_Illumina450K.probeCategories	adaptRefQuantiles
seabi	seabi
seabi,exprmethy450-method	seabi-methods
seabi,MethylSet-method	seabi-methods
seabi,MethyLumiSet-method	seabi-methods
seabi,RGChannelSet-method	seabi-methods
seabi-methods	seabi-methods
seabi2	wm_internal
seabird	seabird
seabird2	wm_internal
sextest	sextest
sex_coef	estimateSex
sort_order	wm_internal
subbo	wm_internal
summits	Beta2M
swan	dasen
swan,MethylSet-method	dasen-MethySet
swan,MethyLumiSet-method	dasen-MethyLumiSet
swan,RGChannelSet-method	dasen-MethySet
tie_norm	wm_internal
tost	dasen
tost,MethylSet-method	dasen-MethySet
tost,MethyLumiSet-method	dasen-MethyLumiSet
tost,RGChannelSet-method	dasen-MethySet
trafo	wm_internal
uniqueAnnotationCategory	adaptRefQuantiles
uSexQN	wm_internal
uSexQN,MethylSet-method	wm_internal
uSexQN,MethyLumiSet-method	wm_internal
uSexQN,RGChannelSet-method	wm_internal
uSexQNengine	wm_internal
wateRmelon	wateRmelon-package
