Package: multiSight
Title: Multi-omics Classification, Functional Enrichment and Network
        Inference analysis
Version: 1.4.0
Authors@R: c(person(given = 'Florian', 
                    family = 'Jeanneret', 
                    email = 'florian.jeanneret@cea.fr', 
                    role = c('cre', 'aut'), 
                    comment = c(ORCID = "0000-0002-9301-4019")),
             person(given = 'Stephane',
                    family = 'Gazut',
                    email = 'stephane.gazut@cea.fr',
                    role = 'aut'))
Description: multiSight is an R package providing functions to analyze your omic datasets in a multi-omics manner based on Stouffer's p-value pooling and multi-block statistical methods.
    For each omic dataset you furnish, multiSight provides classification models with feature selection you can use as biosignature:
    (i) To forecast phenotypes (e.g. to diagnostic tasks, histological subtyping),
    (ii) To design Pathways and gene ontology enrichments (Over Representation Analysis),
    (iii) To build Network inference linked to PubMed querying to make assumptions easier and data-driven.
    Main analysis are embedded in an user-friendly graphical interface.
biocViews: Software, RNASeq, miRNA, Network, NetworkInference,
        DifferentialExpression, Classification, Pathways,
        GeneSetEnrichment
License: CeCILL + file LICENSE
Imports: golem, config, R6, shiny, shinydashboard, DT, dplyr, stringr,
        anyLib, caret, biosigner, mixOmics, stats, DESeq2,
        clusterProfiler, rWikiPathways, ReactomePA, enrichplot, ppcor,
        metap, infotheo, igraph, networkD3, easyPubMed, utils,
        htmltools, rmarkdown, ggnewscale
Encoding: UTF-8
LazyData: false
BugReports: https://github.com/Fjeanneret/multiSight/issues
RoxygenNote: 7.1.2
Suggests: org.Mm.eg.db, rlang, markdown, attempt, processx, testthat,
        knitr, BiocStyle
VignetteBuilder: knitr
Depends: R (>= 4.1)
git_url: https://git.bioconductor.org/packages/multiSight
git_branch: RELEASE_3_15
git_last_commit: 9771d24
git_last_commit_date: 2022-04-26
Date/Publication: 2022-04-26
NeedsCompilation: no
Packaged: 2022-04-26 23:53:38 UTC; biocbuild
Author: Florian Jeanneret [cre, aut] (<https://orcid.org/0000-0002-9301-4019>),
  Stephane Gazut [aut]
Maintainer: Florian Jeanneret <florian.jeanneret@cea.fr>
Built: R 4.2.0; ; 2022-04-27 14:18:53 UTC; unix
