Package: chromstaR
Type: Package
Title: Combinatorial and Differential Chromatin State Analysis for
        ChIP-Seq Data
Version: 1.22.0
Author: Aaron Taudt, Maria Colome Tatche, Matthias Heinig, Minh Anh Nguyen
Maintainer: Aaron Taudt <aaron.taudt@gmail.com>
Description: This package implements functions for combinatorial and differential analysis of ChIP-seq data. It includes uni- and multivariate peak-calling, export to genome browser viewable files, and functions for enrichment analyses.
Depends: R (>= 3.5.0), GenomicRanges, ggplot2, chromstaRData
Imports: methods, utils, grDevices, graphics, stats, foreach,
        doParallel, BiocGenerics (>= 0.31.6), S4Vectors, GenomeInfoDb,
        IRanges, reshape2, Rsamtools, GenomicAlignments, bamsignals,
        mvtnorm
Suggests: knitr, BiocStyle, testthat, biomaRt
URL: https://github.com/ataudt/chromstaR
BugReports: https://github.com/ataudt/chromstaR/issues
License: Artistic-2.0
LazyLoad: yes
VignetteBuilder: knitr
biocViews: ImmunoOncology, Software, DifferentialPeakCalling,
        HiddenMarkovModel, ChIPSeq, HistoneModification,
        MultipleComparison, Sequencing, PeakDetection, ATACSeq
RoxygenNote: 7.1.0
git_url: https://git.bioconductor.org/packages/chromstaR
git_branch: RELEASE_3_15
git_last_commit: 5f6ba7e
git_last_commit_date: 2022-04-26
Date/Publication: 2022-04-26
NeedsCompilation: yes
Packaged: 2022-04-26 21:43:36 UTC; biocbuild
Built: R 4.2.0; x86_64-apple-darwin17.0; 2022-04-27 13:38:34 UTC; unix
