Package: GOTHiC
Title: Binomial test for Hi-C data analysis
Description: This is a Hi-C analysis package using a cumulative
        binomial test to detect interactions between distal genomic
        loci that have significantly more reads than expected by chance
        in Hi-C experiments. It takes mapped paired NGS reads as input
        and gives back the list of significant interactions for a given
        bin size in the genome.
Version: 1.32.0
Date: 2021-11-18
Author: Borbala Mifsud and Robert Sugar
Maintainer: Borbala Mifsud <b.mifsud@qmul.ac.uk>
Depends: R (>= 3.5.0), methods, GenomicRanges, Biostrings, BSgenome,
        data.table
Imports: BiocGenerics, S4Vectors (>= 0.9.38), IRanges, Rsamtools,
        ShortRead, rtracklayer, ggplot2, BiocManager, grDevices, utils,
        stats, GenomeInfoDb
Suggests: HiCDataLymphoblast
Enhances: parallel
License: GPL-3
biocViews: ImmunoOncology, Sequencing, Preprocessing, Epigenetics, HiC
git_url: https://git.bioconductor.org/packages/GOTHiC
git_branch: RELEASE_3_15
git_last_commit: ba72ba3
git_last_commit_date: 2022-04-26
Date/Publication: 2022-04-26
NeedsCompilation: no
Packaged: 2022-04-26 22:48:00 UTC; biocbuild
Built: R 4.2.0; ; 2022-04-27 14:01:02 UTC; unix
