convertSE {wpm} | R Documentation

## Convert the phenotype data of a SummarizedExperiment into a dataframe for WPM

### Description

Convert the phenotype data of a SummarizedExperiment into a dataframe for WPM

### Usage

    convertSE(se_object, gp_field = NULL)

### Arguments

`se_object` | a SummarizedExperiment object containing the phenotype data
`gp_field` | character, corresponding to the phenotype data used to categorize samples into distinct groups if any

### Value

a dataframe containing 3 fields: Sample, Group and ID.

### Examples

    nrows <- 200
    ncols <- 6
    counts <- matrix(runif(nrows * ncols, 1, 1e4), nrows)
    colData <- data.frame(Treatment=rep(c("ChIP", "Input"), 3),
                        row.names=LETTERS[1:6])
    se <- SummarizedExperiment::SummarizedExperiment(assays=list(counts=counts), colData=colData)
    convertSE(se, "Treatment")

[Package wpm version 1.2.1 Index]