topTable {variancePartition} | R Documentation

## toptable for definition

### Description

toptable for definition

toptable for FMT

toptable for MArrayLM2

### Usage

    topTable(
      fit,
      coef = NULL,
      number = 10,
      genelist = fit$genes,
      adjust.method = "BH",
      sort.by = "B",
      resort.by = NULL,
      p.value = 1,
      lfc = 0,
      confint = FALSE
    )

    ## S4 method for signature 'FMT'
    topTable(
      fit,
      coef = NULL,
      number = 10,
      genelist = fit$genes,
      adjust.method = "BH",
      sort.by = "p",
      resort.by = NULL,
      p.value = 1,
      lfc = 0,
      confint = FALSE
    )

    ## S4 method for signature 'MArrayLM2'
    topTable(
      fit,
      coef = NULL,
      number = 10,
      genelist = fit$genes,
      adjust.method = "BH",
      sort.by = "p",
      resort.by = NULL,
      p.value = 1,
      lfc = 0,
      confint = FALSE
    )

### Arguments

`fit` | fit
`coef` | coef
`number` | number
`genelist` | genelist
`adjust.method` | adjust.method
`sort.by` | sort.by
`resort.by` | resort.by
`p.value` | p.value
`lfc` | lfc
`confint` | confint

### Value

results of toptable

results of toptable

results of toptable

[Package variancePartition version 1.22.0 Index]